SimpleSearch - Line and FST details


Line specific information

 
Line ID 218D01
Vector Used pAC161
Line Availability available as T3 set from NASC (N420869)
Segregation Analysis 50:41:36
Confirmed for Hit At1g07280 At1g68400
Parent of DUPLO pair 832
Parent of pair(s) 6063, 81762

Gene hit At1g07280

 
Sequence (A. th genome BLAST matches underlined) 
>04-K014211-022-218-D01-8409
NNAACCTGATCACTTGTAGATTTCCCGGACCTTGAAGCACTTTACAACTTGAATACTACT
CCTGCCGCTTATGCCTAAAGACCTAAAATCTAACTAGTTTACTTCAAGACAGAGCTTCTC
TCTACCAACGGGATTGTCTCAGGAGCCTGGAAACGTTCTCCTTCTTGCTAATTACGCACA
GTTTCTCTACCTTATCATTCATGACTACGACAGGTAATTAACATCTGACCATTATATTAT
AATTTACTACTAATCATGTTATCTTTGATTTTGTTCTTTTATTATACTAAGTTAGATTAT
GGAGTTTTAGATTCGGTTTGGTGTTTAGGTTGGAGTCTTGCAAGTTGATACTAACTGTCA
GAAGTAGCCGTGGAATGGTAGATATTTTATTGCAAATTAGGGAGCCATAGAGATATTTTA
AGCTATGGGATCCTC
GenBank Accession AL767323 [GenBank]
Graphic View Graphic view of gene At1g07280
Predicted Position of Insertion Chr1:2239797 - go to primer design
BLAST e Value 8e-172
Hit Clone Code (BAC ID) F22G5
Hit Gene Code At1g07280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Tetratricopeptide repeat (TPR)-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit HG968825 [GenBank]

Gene hit At1g68400

 
Sequence (A. th genome BLAST matches underlined) 
>04-K014201-022-218-D01-8409
AAATGGATCCATGTAGACTTCCCTGGACATGAAGCCTTTACACTTGTAATATGGAGAGTT
TCGTGCATTTCAGCAATGGAGCTCCACAGAGAGATGGGTTTTGTGTAAAGACTGATTATG
GGAATTGAGACAATGAATTTGGTATCTGACCGTTAAAGTTGTTACCGGAGACGTTGAAGT
TTTGTTAATCGGAGAGGTTGATGTTGGGTATTTGACCGTATTAACCGGTTTGATTCTAAC
CGGAGAGTGATGAGATGGGTTAAATCGGTTAAATACGGTGGAATCTGGCCGGAGAAGTTG
TTGAAAGATAGATGAAGACGGTGGAGACGATTGAGTGAAGTGATTGAAGTGGGGAAGTTA
CCGCAGAATAGGTTGTTTGATAAATAGAGAAGCTTTAAAGCTGTGAGGTTCGAGAGGTTT
GGGATTGGACCATAGAGATTGTTATGTTTCAGACTGAGAACTCTGAGTGATGTGAGTGAC
GGTTAGTGATGAGATTGACCCGCTGAGATTGATGTNTTCGAGTACGAGTCGTGTGACTCT
GTCGCGGTTGCAGGAGACTCCGGCCATTGGCATGGGTTCGTTGCTGTGCTCCATGACGTT
AGTTTTCCCGGGGGATCTCGGGGGGAGTTTGAAGTTCA
GenBank Accession AL767322 [GenBank]
Graphic View Graphic view of gene At1g68400
Predicted Position of Insertion Chr1:25648228 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T2E12
Hit Gene Code At1g68400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation leucine-rich repeat transmembrane protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL767322 [GenBank]


Last Updated on 10.06.2021 13:37