SimpleSearch - Line and FST details


Line specific information

 
Line ID 219C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N420959)
Segregation Analysis 50:46:39
Confirmed for Hit At5g20740
Parent of DUPLO pair none
Parent of pair(s) 6844

Gene hit At2g37670

 
Sequence (A. th genome BLAST matches underlined) 
>51-K014212-022-219-C07-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCCTGAACGATTGAATATATCCTGCATAG
CACCTTGCAGAGAGCTATCGGGCTCATCCTATAACGAGAAGACTGTTTCAGGAACATGTA
CGTAATCCGGAATATGATTGTGTCGTCTCCCGGATGATCCCTTTCCTTTCTTTTTCTTCT
CTACACAGTTATCTCATTTCCAGAAGAGTCACAAAGTGAAGGATGAATAGGAGTGAGACT
TCCTTCATTCATAGACATTAGTTCACATTCTTGAACCTCCCACACATGAATGACTCTATC
CGCTCCTCCGCTCGCTATGGGATCCTCCCTTAGTTGAGAACATGCTATTAAAAACGAGTA
AAAATTAAATCAAAATTCATATTCTGATATTGAATTTGAAAACACACAGCAAATTTGATT
AACCCCGCCTAATTTACTAAATAAAATAACACCACACTATTTTATCCCAAAGAAATAAAA
AATAACACCAAACTATCCTAAAGTTCTGGTCTGTAATAACTTTAATGATGCTTTCCTAGG
CACCCC
GenBank Accession AL767436 [GenBank]
Graphic View Graphic view of gene At2g37670
Predicted Position of Insertion Chr2:15799022 - go to primer design
BLAST e Value 6e-120
Hit Clone Code (BAC ID) F13M22
Hit Gene Code At2g37670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g20740

 
Sequence (A. th genome BLAST matches underlined) 
>51-K014202-022-219-C07-8409
GTAGATTTCCTGGACATGAANGCCTTTACAATTGCGAATCCAGCGAAAGAAATAAGACTG
TGCAATGCATAGATTAATAACAAAAATGTAAATAATTTGTATATGTAAGTAACGATACGA
AAAGGAACAAAACTTGTAGAATTATTGGCGGACTGGTCACCAGTGCCCAATTATTTTCAA
AGAGGTTTCAGAAGTTTGGGTCCACGTTGGGTTATGAATTGACAAAAGAGGTTTCAGAGA
CAAAATCTTTATCTGCCATTAAATGGCTGCCATTTCTTTTGCTCCACTCTTGTAACTTTT
AAGGGTAAACTGAATTCTACATTACATTTTTACATGCTATTAAAAACGAGTAAAAATTAA
ATCAAAATTCATATTCTGATATTGAATTTGAAAACAAACAGCAAATTTGATTAACCAAGT
ATAATTTACTAAATAAAATAACACCACACTATTTTATCCCAAAGAAATAAAAAATAACAC
CAAACTATCCTAAAGTTTTGGTCTGTAATAACTTTAATGATGCTTTCCTATGGGATCCT
GenBank Accession AL767435 [GenBank]
Graphic View Graphic view of gene At5g20740
Predicted Position of Insertion Chr5:7026729 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T1M15
Hit Gene Code At5g20740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant invertase/pectin methylesterase inhibitor superfamily protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37