SimpleSearch - Line and FST details


Line specific information

 
Line ID 219F05
Vector Used pAC161
Line Availability available as T3 set from NASC (N420993)
Segregation Analysis 50:46:38
Confirmed for Hit At5g23370
Parent of DUPLO pair none
Parent of pair(s) 56848, 91503

Gene hit At2g37670

 
Sequence (A. th genome BLAST matches underlined) 
>38-K014212-022-219-F05-8409
TTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACGATTGAATATAGTCTCTGCTGA
ACACTCCCATATTACGGAACACTAGCCGGCAGATTGTGAACTACACTACTTGTCTACCCA
TAATGATCGATGATACCGCAACACCTGCTATTGCCTATTATCCGAGCTGAATCGTGCCGA
CGCCGTTTAGTATACGAACTCTCTGACGGTGAGGATTCAAAAAAAAACGTTCAGTGGGCT
GAGGAATATGCTATGGGATCCTCCCTTTAGACGAGAATTCACATTCTTGAACCTCCCACA
CATGAATGACTCTATCCGCTCCTCCGCTCGCTATGGGATCCTCCCTTAGTTGAGATATAC
CTTCTTCAACATCTTGGCTCAGCGTTGGGAATCCTTTTTAAGACCAAAACGA
GenBank Accession AL767485 [GenBank]
Graphic View Graphic view of gene At2g37670
Predicted Position of Insertion Chr2:15799007 - go to primer design
BLAST e Value 3e-23
Hit Clone Code (BAC ID) F13M22
Hit Gene Code At2g37670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g23370

 
Sequence (A. th genome BLAST matches underlined) 
>38-K014202-022-219-F05-8409
ATTCTGATCCATGTAGATTTNCTCTCGGACATGAAGCCTTTACAATTGATGGAAGCTGGA
TCAGGCATGTAACCCGCCGGAGAAGTCTTGACGGCAGGAAATGTAATGAGTTGTTGGTGA
ACTCTGCTCAATGTCATCTTGGAGAATTGAGTAGTGATCTTGATTCTTGATTTTGTGAAA
GAGTAAGAGAGAGAGATTGTGAGTGATGGTTGATGATTAACCGTGTAAGTGGGAAGGTAT
TTAAAGGGAAAGACAAAGAGACAAGAGGCAGTTGAAACAAAATACTTAATCGTTGAGACT
TAAGAACCTTTGTGGTAAAGTGATGAGTCATGTATGGGTCATCAAGTCACATAGATAAAG
CTACTTTCTTTGGAGGCATATACTCTGTTTGCCTTCTTTTTTTAAGGGAAACAAAACCAT
TTAGACATGCATATAGATAAAGGAGAACATAACTAAAGTTTTTTGTAACTACCAAATCCG
TGTTATGACACAATTTTGTCTAAAGTAACTTCAGTAACTACCGAAATGTTCCAAATAATA
AAACAAATTTAGGAGTAATTAAGAACGTCTCTATATATGGATCTTCTTCAAATATCTTGA
TATTGCTTTTCAATGTTTCCTCTTTAAAATTTGAAACTGGGGAGATGCCATTTACAAAAA
TTAACGATCCATTGCTCGACATAAAAACTCAAATCACATTTAAAAGTTGACTTTGAGAGA
TCGCCTAATAAAAGATGATCACACGGAATGAC
GenBank Accession AL767484 [GenBank]
Graphic View Graphic view of gene At5g23370
Predicted Position of Insertion Chr5:7864110 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MKD15
Hit Gene Code At5g23370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GRAM domain-containing protein / ABA-responsive protein-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37