SimpleSearch - Line and FST details


Line specific information

 
Line ID 219F08
Vector Used pAC161
Line Availability available as T3 set from NASC (N420996)
Segregation Analysis 50:33:26
Confirmed for Hit At5g22700
Parent of DUPLO pair none
Parent of pair(s) 91251, 91252

Gene hit At5g25420

 
Sequence (A. th genome BLAST matches underlined) 
>62-K014212-022-219-F08-8409
CTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATTTCCGCCTGAAA
TAGTGCTGATAGCAAAGAGACATCAGAATGTATGTATAGAAAACTAAGATATCTGTAAAC
GATTTAGTGTTTTAATTTAATTTCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL767490 [GenBank]
Graphic View Graphic view of gene At5g25420
Predicted Position of Insertion Chr5:8840941 - go to primer design
BLAST e Value 3e-23
Hit Clone Code (BAC ID) F18G18
Hit Gene Code At5g25420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Xanthine/uracil/vitamin C permease
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g22700

 
Sequence (A. th genome BLAST matches underlined) 
>62-K014202-022-219-F08-8409
NTTTTGATCCATGTAGACTTTCCCTGGACATGAAGCCTTTACAATTGAATCTTTCCTGAT
AAAAGGTTGATCTCCCAGGACAATGGATTAGACATATGGGCGACTTTGAAAATGAAGAGG
CTACATTTGCAAATCACAATCATAGAATCTCGCATTTAACCGCACCATGTTACAAAACTG
AGGCATCGGTTCGTGCTTCAAGTAGTGACAAATGATCTGCAAAACACAAAGAAAATGCAG
TTTTTATCCAAAGAGACAGTGTCAAAAGTTCAACTATATATCTGTGTATACCATCAAAGT
TGTTCCACTTATAGTTAGGTCCCTTATGCTTGAGAGCCCGGTGAGTAATTTACCAACATT
GCTTCTCTCGAACGTGACAGGTAGATCCCAAATATCGTTCACATTAAAACTAACCTTGAT
ATCTGCTTTTGCGGATGAACCCAAATTGCTTATCACAAAACTCGCCGACTGATCATCTTT
AAGACTCAGATACGCCAGCCGAGGAGCATCAATGATAACCTTCCACTCGTCGATATCATC
AATAAACCAACCGTTGGAACTATCAAGAACGAGTTTGAGACTGTTAAGTGACCTATGGGA
TCCTC
GenBank Accession AL767489 [GenBank]
Graphic View Graphic view of gene At5g22700
Predicted Position of Insertion Chr5:7546172 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MDJ22
Hit Gene Code At5g22700 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LOW protein: F-box/FBD/LRR-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37