SimpleSearch - Line and FST details
Line specific information
| Line ID | 224A10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N315548) |
| Segregation Analysis | 2:1:1 |
| Confirmed for Hit | At5g41870 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5345, 5390, 5396, 5405, 89188, 89206 |
Gene hit At3g51020
| Sequence (A. th genome BLAST matches underlined) | >73-K014242-022-224-A10-8409 TATACAATGAACGACACTAACTCGAAATCTGGAGTCATTATAGAAGTATATAGATAGAGT TACCATATTAAAATAAATAAAATATGCAAATTGTAATCTTCAAACGCAATATAAATATAT ATACACCATCCTCGTTCATTAGCATAAACATCTTCATACTTCTTATTTTTTCTTCATACA CAAACATGTTTTCGTCAAGTCGTACATCTACAAGCCTGGTCCGTTTTCAATCTATCATTA CATACTCATAATCATATTACTCATTTTATCCTTTGCTAATTCGTTACATATTCGAATGTT TTCTTGCAGACTTGTGGGTTTAAAGTGAACACTATGGGATCCTCCCTATGGCGAGNAATC TGGCGTTTCCCTCCACCCCAATTCCCACCATTTTGACCCATCCTCTTCTCATCCCTCCCC CCCATCCCTATCTCATACACATCTATATACCCCCCCTCCCCCATTGTCTATTTTCCTTCC CCCCCCCCTTGTTGCCCCCACAATCCCATATCCCCCCCTACCTCCCCTCTTTCTCTTCTC CCTCTCCGCACCCATCTCCTTCCCCCCATGCCCCGGTCCACCCCCCCCCGGCGATCAAAC ACCTCACCCCGTCTCCCCTACACCATCATCCACCCTTCTACCCCCCCCTTCCGTTCACCT CACGTACCTCAACGTCCCGCCGTGACACCATTCCTCACCATACGATCCCCGCAATATATC CCCAATCCCCGCCCCCCAATAAACCACAAACAAATACTCGCCCCACCCCCGATCATAACC ACATATCGCGGTAGAAACCCCCATTTTTTCCGTCCCCCCCTTACCCGCACCCTACTCCCC AATCCCATTACCCGTTAATTTCCCCCGCGATCCATTTATTAATCAAAC |
| GenBank Accession | AL768037 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18949468 - go to primer design |
| BLAST e Value | 2e-113 |
| Hit Clone Code (BAC ID) | F24M12 |
| Hit Gene Code | At3g51020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | metal ion-binding protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
Gene hit At5g41870
| Sequence (A. th genome BLAST matches underlined) | >73-K014238-022-224-A10-8409 CATACGGTCTTGATCGTTATCCCTCTTACTATGGGAAGAGCGGATGTGTTGAATTTATCG GCTGGATGATCTCCGGTGTCGCCAGAGATCTTAGTCCCGGTCCGGACTTTTTCTATGGGA TCCTCCCTATAGTGAGCCTCTCTTATTAGTATAGACACACTATATACTGCTTATGGGATC TGCGTACGCAGGCGTGTTTTCCTCATCTCTTGCATGTGCAAACCTGGCCCAGGTTCAGTC TATCATTACCTACGCACGAGCATGACACTCCTCCCATGCCTTGCTCACCCATTACATATC CGATTGTATTCTTGCATACGTGTGGGTCTAAAGTGAGCGCTATGGGATCCTGCCTATTGC GAGGACGCCTGATATGACCTCTATTTGAATCTTCGCCTCCATCGGAATTGGTTATCCTCT A |
| GenBank Accession | AL768036 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:16759034 - go to primer design |
| BLAST e Value | 7e-49 |
| Hit Clone Code (BAC ID) | K16L22 |
| Hit Gene Code | At5g41870 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pectin lyase-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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