SimpleSearch - Line and FST details


Line specific information

 
Line ID 228F07
Vector Used pAC161
Line Availability available as T3 set from NASC (N421859)
Segregation Analysis 50:21:12
Confirmed for Hit At5g40100
Parent of DUPLO pair 2815
Parent of pair(s) none

Gene hit At1g70570

 
Sequence (A. th genome BLAST matches underlined) 
>54-K014263-022-228-F07-8409
CTGATCCATGTAGATTNTCCCGGACATGAANGCCGTATTAAAAGTAAAAAGAAGCAAGAA
AGCATGTAGCAGATAAGATTATAGTAAATTCAGATGATTAAAGTGACGGTTTTAACGCGA
TATTTTCAGGAAATGGATGACTAATAGTTCTATGGGATCCTCCCTATAGTCGAGAGTCTC
TAGCATCTGTGAGATACCTCCTATAAGTACTCTATTTTTATAGACCGAGATAACAGTATA
AGCGATTTCACGCGAGAGACAATCAATCTGATGAAAGCTCTTCTAAATCCTGAATCTTCC
TTCTGTCTCTCTTCGATCTCTTCCTCACAGATCAAGAGGTCTTTACACTTTAACGGATTG
AGTTCTTCATGTCTCCGGTTTCCTTTAACCGATTTTGCCGGACGTTTACCGCGGAGGAAG
CTCACTGGTGGGCTGTGTATAAAGGCCGTTCCCGACTCTGGAATGATGGAGCATTTATGG
CTTAAGGAATCAGATGTTACGAATCCGGCTTTACTCTCCACTTATCGGAGATCGGACATC
CCGAAGCCAAACCTTACT
GenBank Accession CR770287 [GenBank]
Graphic View Graphic view of gene At1g70570
Predicted Position of Insertion Chr1:26608507 - go to primer design
BLAST e Value 5e-139
Hit Clone Code (BAC ID) F24J13
Hit Gene Code At1g70570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation anthranilate phosphoribosyltransferase
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At5g40100

 
Sequence (A. th genome BLAST matches underlined) 
>54-K014267-022-228-F07-8409
CTGATCCATGTAGATATTCCCGGACATGAAGCGCTTTACAATGTGACTTCATGATGGTTA
AATACTTAGTTGCGTGATTCTTCTTTTGATGAATAAATGTTATAGGGACTCTTAATTATC
CCGAACGGGTCCTAAACTTCTAAACACCGAGAACTCGAACCCTAAATACCCGACCCGAAT
ACCCAATAGCGCGCTATGGGATCCTACATATAGGGAGACCTGCAGATGTTTAAACAGATT
GCTTTTGAAGGAGGCAGTCCTCCTTCTGTTGATTTTGAACAGCTCTCAATCCGAGCAGCT
CGGCTTGCGCACGGGCTTCCTTCTGCCCTTCAAGCCTATGCCTTATTTCTCCGTGGAAGG
GCCAACTCTCCTGAAGAATGGGAAGAAGCAGTATGTGGACTTGAAAGTACTCCTGACGAG
AATATAATGGAAATCCTGAAAATTAGCTACGAGGGTTTAGCAAAAGCACATCAGAATGCT
TTTCTCCATGTTGCATGTCTCTTTAATGGAGACACTTTCCGGCGTGTCACTTCACTACTT
GATGTTAGCAGAATGGAAAGTAACTTGCGGATGAGAGTTTTAGCAGACAAATCTCTTATC
AATATAACAGGTCATGGATATGGTAACCCTGCATAAGTTGGGGTGAACAAATGGGAAAGA
GAAATTATGGTTGCCCGCGGGAAAATTCATCGGGGACCCCGGAGACAATCCATG
GenBank Accession AL761824 [GenBank]
Graphic View Graphic view of gene At5g40100
Predicted Position of Insertion Chr5:16044941 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MUD12
Hit Gene Code At5g40100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (TIR-NBS-LRR class) family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37