SimpleSearch - Line and FST details
Line specific information
| Line ID | 231G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N422158) |
| Segregation Analysis | 97:93:74 |
| Confirmed for Hit | At1g12570 At1g13420 |
| Parent of DUPLO pair | 12903 |
| Parent of pair(s) | 4414, 4638, 4664, 4693, 4825, 4867, 4873, 4951, 7328, 8522, 11283, 90489, 90490, 90491, 90492, 90494 |
| Note |
Gene hit At1g12570
| Sequence (A. th genome BLAST matches underlined) | >47-K014317-022-231-G06-8409 GGTTGGATCCATGTAGACTTTCCTGGACATGAANGCCTTTACAATTGAAGCTCAATTGGA GATCCATCTTACTCGGCTTCGACATATGTTCCTTCCCCGGTAATCCCAACAACCTCAATG AGTGAGACCTCAACGGGGACTGGAGAAGGAACGAACACGGCATTCATAGGGTTGTCATAC ATGCCTTGACCCACATGAGGCTGGTCCATCACCACCGTGATGTTTTGGGCCTGTAATTGA GCCGATGGGCCAACACCACTTAGCATAAGAAGTTGTGGGCTCACTATGGGATCCTCC |
| GenBank Accession | CT026192 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4278919 - go to primer design |
| BLAST e Value | 2e-114 |
| Hit Clone Code (BAC ID) | F5O11 |
| Hit Gene Code | At1g12570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g57854
| Sequence (A. th genome BLAST matches underlined) | >67-K020163-022-231-G06t-8409 CTCAAAACGGGGTAGGGAGGGGTGAGAATATTTTCCAATCGGATTTTTCCTTTGAGGATA TATGCATACTTCACAAACGATATCGGAGATGGTTTGGTGCTAAATCCTATGGGATCCTCC CTATAGTGAGATCCNNAGGANNNNNNNNNTNNNNNNTNNNNNNNAANACNNAAANNNAAT TAAACCCCCCCATCCTAAATCTTCATCCCCTTCATCTACCTCTTCCCTCATATTCCTTCT CCACCATTCCATTTTTCTTTATACCACCCATATCAATCCTCCCACTACCTATCATTTTCC ACTATCTTCACAATAAANTNACAAATANCTANNCAATNNAATCCAANNATNTTTCCNNAT ATTACCCTTTNTTCAAAANTCTCAATTNCCCT |
| GenBank Accession | BX530841 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:21425532 - go to primer design |
| BLAST e Value | 2e-28 |
| Hit Clone Code (BAC ID) | T10K17 |
| Hit Gene Code | At3g57854 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 412C05 |
Gene hit At1g13420
| Sequence (A. th genome BLAST matches underlined) | >47-K014313-022-231-G06-8409 CTGATCCATGTAGATTNTCCCGGNACATGAAGCCTTTACAATTGAATACTATAGCTTGAC CAATGACATGTGAAGCGATGATAGGAAAACATATCATGAAAGAGAGCCGCGGTGAGATGA AAGCGCGAAGTTTGATCTCTTTACTTACTTCAAACATAGATTGCTCAGGGACCAAGTTGT ACAAGTACCAAGGATGTTGGTACGACAAAGATATTCTCCAAGCAATCCTCAATTTCAACA AAAACTTTCAGCCACAAGAAACGGATATAATTGTTGCTTCTTTCCCCAAATCGGGTACGA CTTGGCTCAAGGCACTCACATTCGCACTCGCGCAAAGATCAAAACACACTTCAGACAATC ATCCTCTGCTAACTCATAATCCTCATGAGCTATGGGATCCTC |
| GenBank Accession | AL938012 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:4604879 - go to primer design |
| BLAST e Value | 8e-141 |
| Hit Clone Code (BAC ID) | T6J4 |
| Hit Gene Code | At1g13420 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sulfotransferase 4B |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL938012 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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