SimpleSearch - Line and FST details


Line specific information

 
Line ID 234H08
Vector Used pAC161
Line Availability available as T3 set from NASC (N422460)
Segregation Analysis 50:27:25
Confirmed for Hit At1g50840
Parent of DUPLO pair 1174
Parent of pair(s) none

Gene hit At1g35790

 
Sequence (A. th genome BLAST matches underlined) 
>64-K014337-022-234-H08-8409
TTTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGATA
AGAATGAGAAGGCATAGAGAGTGGACATTGCTGAGTACATCTGCATCATCACTCCAGATC
AGACCACTGAGAAGATCCCAGATCCAGGTAGCTTCATTCCTGATTGCTCTATCTCCACAA
GCAGGTTCAGTCGCTCTTTGTGTGATATGGGATCAAGTATCAACCTCATGCTACAGCTGG
TGCTATGGGATCCTCCCTTAGGTGAGACTGGGGAATGCTCCCTCTGGGGGTACGCAGTGA
CCGGCTCTATCGGGATCCTCACTTCATATGGNGCAGTCCAGAC
GenBank Accession AL938428 [GenBank]
Graphic View Graphic view of gene At1g35790
Predicted Position of Insertion Chr1:13295932 - go to primer design
BLAST e Value 2e-98
Hit Clone Code (BAC ID) F14D7
Hit Gene Code At1g35790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown
Other FSTs Supporting this Hit AL938427 [GenBank]

Gene hit At1g50840

 
Sequence (A. th genome BLAST matches underlined) 
>64-K014333-022-234-H08-8409
TTTGATCCATGTAGATTNTCCCGCACATGAAGCACTTTACAATTGAATATATCCTGCAAA
TCACATGATGAACATGTTCAATTGTAAGATAACTCGACTGATCCATATTGACGCCGGAAA
TCTACGAGACCTTCCTATGGGATCCTCCCTATAGTGAGAGAGTGGAGCATATGATGTCTC
AAAAGCATCCTTAAGAAGTGAGGGGAAGATGTTTTCCATGATAGTTGTGCACTTACCAGC
GGGGATCTCCTGCTTACAACGACGCTTTCGTGGATAAGGAACAGGCGGCGTGTAGGCAGT
CTCGGGCTTCATCGGGATTCTCACTTCATATGGTGTAGTCCAGACCCAATGTCGATCGAC
ACTATGGGATCCTCCCTTAAGTGAG
GenBank Accession AL938427 [GenBank]
Graphic View Graphic view of gene At1g50840
Predicted Position of Insertion Chr1:18843839 - go to primer design
BLAST e Value 1e-07
Hit Clone Code (BAC ID) F8A12
Hit Gene Code At1g50840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation polymerase gamma 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37