SimpleSearch - Line and FST details


Line specific information

 
Line ID 236D09
Vector Used pAC161
Line Availability available as T3 set from NASC (N422605)
Segregation Analysis 50:41:33
Confirmed for Hit At5g06420
Parent of DUPLO pair 12012
Parent of pair(s) none
Note

Gene hit At1g01350

 
Sequence (A. th genome BLAST matches underlined) 
>68-K014339-022-236-D09-8409
CTGATCCATTGTAGATTTCCCGACATGAANGCCTTTACAATTGAATATTTCCCTTTTTTT
GTATCTCGATCATAATAAAAACTCTATGGGCATCCTCCCTATAGTGAGAAGNTAAGTCTT
CCACTCCAATGAACTACCCTACCCTGAATGGGGTATTGGCTCCTTTCATACTTTAAAAGC
CTAGATGCTACGAAAGATTTGTTTAGATTGGGTGACACCGTAATAAAAAAAGGGCTCCCT
GCCAATGAACCAAGCAAGGGGTTTGGCTTTATCGTGTGCGACGGTTTCCTTGATACCCCC
AGAAGCGGGTTCCTAAACCCCCATAGCTTAATTTCTTTTCTTAACTTTCTTGGCCTTTTC
CCATTTTTTTTCTATATAGAATCCGGGTTTGTAATCCCCACGGTCTTGCAAAAACTTACA
CAATTTTCCATATCCCACCGTTCCGGGTTTCCTTGAAATCCTGGCAAA
GenBank Accession FR806280 [GenBank]
Graphic View Graphic view of gene At1g01350
Predicted Position of Insertion Chr1:137871 - go to primer design
BLAST e Value 3e-08
Hit Clone Code (BAC ID) F6F3
Hit Gene Code At1g01350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g06420

 
Sequence (A. th genome BLAST matches underlined) 
>68-K014335-022-236-D09-8409
ATGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAAGCTCATGTATTGTA
ACCAATCTCGATGGGGATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGA
ACGGAGTAAAGCTGAACAAGGATTGTGAAGTCCTTCTTTCACAGGACAAAAAGGCAAAAA
CTATACATTTGATTATTTGCTTGAGGAAAGCTTTTTGTTTTGTTGTACTCACTGGCCTAT
ATACTGTATATTCGGATGACGATGGTTGTTTCAAACTGATTAACTTTTAAATTTAAACAA
ACTGAAAAAGTTTTGGAGTCAACTTCCTATGGGATCCTCC
GenBank Accession AL938615 [GenBank]
Graphic View Graphic view of gene At5g06420
Predicted Position of Insertion Chr5:1962781 - go to primer design
BLAST e Value 2e-144
Hit Clone Code (BAC ID) MHF15
Hit Gene Code At5g06420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37