SimpleSearch - Line and FST details


Line specific information

 
Line ID 236D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N422607)
Segregation Analysis 50:23:18
Confirmed for Hit At1g79510
Parent of DUPLO pair 12832
Parent of pair(s) none

Gene hit T8K14

 
Sequence (A. th genome BLAST matches underlined) 
>84-K014339-022-236-D11-8409
CTGATCCATGTAGCATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGACTTT
ACATGTACGAGAAAAGAGCTCGAATATACGAACATTAAAAATGAAACCGACAAGAAAGAT
GTAAAATGGGCCTAACTCTCTATGGGATCCTCCCTATAGTGAGANACGAACGATCTCGAT
ATTGATACACCATCCGTGCGTCATACCTTACGACAACGGAGAATCACTTCAATTGAGTAC
GCTTTCTATACGTGGGTCGGATCTCGGATTCTTCCACTANGCAGCTCGTGGGTGGGGGTC
CATCTTTGGGACACCTGTAGGCAGAGGCATCTTCAACGATGGCCTTTCCTTTATCCCACT
GATGGCATTTGTAGGAACCACCTTCCTTTTCCACTATCTTGGCAATAAAGTGACAGATAG
GATGGGCAGTGGAATCCGAGGAGGTATTCCGGATATTACCCTCTAGTTGAAAAGGCGCAA
ATACGCCATGGGCCCTTATGAGACTCGATCATTTGATATCTCTCGGAGTTCACGAGGCGT
GTCGT
GenBank Accession AL938618 [GenBank]
Graphic View Graphic view of sequence AL938618 of line 236D11
Predicted Position of Insertion Chr1:29910541 - go to primer design
BLAST e Value 9e-33
Hit Clone Code (BAC ID) T8K14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g79510

 
Sequence (A. th genome BLAST matches underlined) 
>84-K014335-022-236-D11-8409
GTTGGATCCATGTAGACTTTCCCGGACATGAANGCACTTACAATTGAATATATCCTGACT
TTACAGACGAGAAAAGAGCTCGAATATACGAACATTAAAAATGAAACCGACAAGAAAGAT
GTAAAATGGGCCTAACTCACTATGGGATCCTCCCTATAGTGAGACTGNNNNAGGTGCGCA
GGTTAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTA
CATCAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAA
AGATCTCAATTACGACATTTACAGGTGTGTTTTCCTCTTTCTCCTTTAGGTGATTCCTTC
CTTAAACCTGTCAATGAAAGCATTTGTGTTTCCTCTTTCAGGGATGATATAACATTAGTG
GATCCAATGAACACGTTCTCTGGGATTGACAACTACAAATTGATCTTCTGGGCACTTAGA
TTTCATGGCAAGATTCTCTTCAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCA
TCAGAGAACATGATTCTCATCAGGTGGAATCTTAAAGGTGTACCTATGGGATCCTCCC
GenBank Accession AL938617 [GenBank]
Graphic View Graphic view of gene At1g79510
Predicted Position of Insertion Chr1:29909103 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T8K14
Hit Gene Code At1g79510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF2358)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37