SimpleSearch - Line and FST details
Line specific information
| Line ID | 236H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N422651) |
| Segregation Analysis | 50:30:29 |
| Confirmed for Hit | At1g27780 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 446, 9634 |
Gene hit At1g09430
| Sequence (A. th genome BLAST matches underlined) | >56-K014339-022-236-H07-8409 GTTTTGATCCATGTAGCATTTCCCGGACATGAAGCTCTTTACAATTGAATATATCATGAG CCCATTTTTGGTTTAATAGATCTGCTAAGAGCCAATTCCATAGCGCAATTCAGTTGGAAC TCTTGAATGAATCGTGTTTCGACTGAATGTTCTTGCTAGTAATCTTGGACTTACATAGAG CTAATGAAAGTGAGAATCTTGGGAAAGATCTCTTTCTACTGATGACTTTGGACATGGCGT GATTACGTGATTTCTAGGGGATCCTCTGATAATACTAACAACCTGATTACGTATTGCATT GAACACACTGGATNCAAAGAATCATGTTTTCTTACTGGCTAATAGCTCACGGCTCCTCTC TCTTGCNGTGTACCAAATAATACTCACAGGTCTTCTCTTTGTCTCGGAAA |
| GenBank Accession | FR806290 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3042247 - go to primer design |
| BLAST e Value | 1e-56 |
| Hit Clone Code (BAC ID) | F14J9 |
| Hit Gene Code | At1g09430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ATP-citrate lyase A-3 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g36850
| Sequence (A. th genome BLAST matches underlined) | >56-K014335-022-236-H07-8409 GTTTGATCCATGTAGACTTTCCCGGACATGAAGCTATTTACAATTGAATATATCCTGAAC CCATTTTTGGAGTAATCGGACTGATACAAGGCAATTCCATACCGCGATAACGCTGGAACT GTGCCATGCATCATGTTCTGGAGGAATGTTATTGCTATTATACTTGAACTTACAGATAGC TAAAGAAACTGAGAATCGTGGGAAACATCACTTTCTCACTGATCAGTGTGGACATGGCAT AGATTAGAAAATTACTAGGGGCTTTTCTGTAACATCGTTCACCACTGTTCACATATGGGA TTGAGCCACTGTGACCAAAGTATCTCCGGATATTACAGGCTAATCGTTCACAACTCCGTA CACGTGCATCTACCAAATAATACATAAAAGGTTTTTTCTTTGTCTCGGAAAACTTGATGA GGACGCTCAGTATGGGATCCTCCC |
| GenBank Accession | AL938672 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:14511232 - go to primer design |
| BLAST e Value | 3e-20 |
| Hit Clone Code (BAC ID) | F5H8 |
| Hit Gene Code | At5g36850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At1g27780
| Sequence (A. th genome BLAST matches underlined) | >39-K100814-0022-236-H07C-8409 NNTTCTGTTTATTCGGACATGACCATTTACAATTGAATATATCCTGTATTTATGTATTGA CTATCAGGAGCTTTCCAAAACGTTTGCAACCGCTGTTACCTCTGGTCGTGTGCCAGGCGT GTTAGTCAAATGCTATAGTTATTCCATTCTACTTTATATGTTTGTTTATGTTATCCGCTA TGTCATGTTTCAAATTATGATAAGCCTTCTACTATGTTGTTTATGTTTATGTTGAAATTA TATTATTGCTCAAGTTGAGAATTTTTCAGCCAAATTCACATATGATATTTAGACACTGCA GTAAATGTAAATTTGGATATTAAAATCTAAGCGTCCACAACTCCGTACACGTGCATCTAC CAAATAATACTTAGAGGTTTTTTCTTTGTCTCGGAAAACTAGATATGGACGTTCACTAGC ATGAGATATCAACTCTAACGTACACTAAAAAATAACACATGCAAACATATGAGGTCTTTG GTTTGTCTCATAAATGGTGATATTTACGAATGAACGTACACTAATAGTACACTACAGCGT ACACTGTCTGTTGAGTAAATGTAGAAATGTAAATATGGACGTACACTAAAACGTACACTA CAACGTACACTGTTTGTTGGGCAAATGTAAAAATGTAAA |
| GenBank Accession | HE664361 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9682903 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T22C5 |
| Hit Gene Code | At1g27780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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