SimpleSearch - Line and FST details


Line specific information

 
Line ID 237H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N422745)
Segregation Analysis 50:35:34
Confirmed for Hit At5g28220
Parent of DUPLO pair 2263
Parent of pair(s) none

Gene hit At1g62380

 
Sequence (A. th genome BLAST matches underlined) 
>40-K014336-022-237-H05-8409
CTGATCCATGGTAGATTTCCCGGACCATGAAGCATATTGTTAGCAAAAAGATATTTTGAA
AATGTGGGGTGAACATGACATAAAACAACTTGGTCACCAAGATTGATGACAATAGAGTGG
TTGAGAGGAGGAACATCAATCCAGTCACCATCTTTAAGAAGCTGGAGACCACTGACCTTG
TCGTCTTGAAACAACAAGATGATGCCTCCTGCATCAGTGTGGGCCCTAAGACCTTTGATC
ATCTCTGGTTTAGGACATGGTGGATAATTGCTCACCTTTGTCCCAAAGGTTGGGCCTTTT
GTTCCATGAAACACTTTCTTCAAATACCCTTTCTCTAACCCTATGGGATCCTCCCTTAGG
TGAGGACCACACAAAAAAAAAA
GenBank Accession AL938802 [GenBank]
Graphic View Graphic view of gene At1g62380
Predicted Position of Insertion Chr1:23083634 - go to primer design
BLAST e Value 4e-161
Hit Clone Code (BAC ID) F24O1
Hit Gene Code At1g62380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ACC oxidase 2
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g28220

 
Sequence (A. th genome BLAST matches underlined) 
>40-K014340-022-237-H05-8409
CTGATCCATGTAGATTNTCCCGGGACATGAAGCACTTACAATTGAATATATCATGGTCTT
ATTAATGGTTTAGAAATGTTGAAAAGGCTTAACCCGATTTTGGTTATGTACTAACAAGAT
TGGTTATATTTGTTTCCGATTTTGATATCCAACTTAGCTTTAACGTGACTAGATCATACC
TGATGTGTGTATTCTGGCCCACTACACATCCCACAATGCGCTAAGAAAGCTATGGGATCC
TCCGATAGGTGAGANTGTTATAAAAAGTATAGATAACGTTAAACAATTTGGTTCCAAATG
TTACATCCTTCAAGTCAACTCTAAGTTTTGATCTTGATATAAGATAATACACTATAATAC
GTTGCTTCACACGGAATGTATCAGCGGACAGCAAATATAACGCACCTGTGCGACACCGAG
ACATTGACAGTCCATAGCTGCAATTGCCACCTGCTCATTCAGTGTCCATTCTA
GenBank Accession AL938803 [GenBank]
Graphic View Graphic view of gene At5g28220
Predicted Position of Insertion Chr5:10191904 - go to primer design
BLAST e Value 1e-105
Hit Clone Code (BAC ID) F26C17
Hit Gene Code At5g28220 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein prenylyltransferase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37