SimpleSearch - Line and FST details


Line specific information

 
Line ID 239B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N422864)
Segregation Analysis 100:71:42
Confirmed for Hit At5g59090
Parent of DUPLO pair none
Parent of pair(s) 5403, 10321, 10330, 10341, 10350, 10351, 10363, 11344, 84688, 84708, 84710

Gene hit F5J6

 
Sequence (A. th genome BLAST matches underlined) 
>26-K014365-022-239-B04-8409
TTGATCCATGTAGATTTGCCCGGACATGAANGCCTTTACATGGGACACTTATCATGTAAC
GTGCAGAAGATACTCATGCATGTGAGGATGCGTACAAAGGATTAGAACATACATTAGCCT
ACTGGGATAGGTATGTGTAAGAAATTTATGCCCTGGTATTGCTTGAATAATGATATACTT
CTTCTGCAAGCAGATGGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL938909 [GenBank]
Graphic View Graphic view of sequence AL938909 of line 239B04
Predicted Position of Insertion Chr2:7588699 - go to primer design
BLAST e Value 5e-19
Hit Clone Code (BAC ID) F5J6
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g59090

 
Sequence (A. th genome BLAST matches underlined) 
>26-K014369-022-239-B04-8409
TTTCGATCCATGTAGCATTTCCCGGACATGAANGCCTTTACAATTGAATATATTGTCCAG
ACGTGTGAAGTACTCTGTTTTCTCTGGAACTTCAATGGCTTGTCCTCATGTTGCAGGGGT
GGCTGCGTATGTCAAGACGTTTTACCCTATGGGATCCTCCCTATAGTGAGATACTNNTTC
TGCANNCAAATCACTATGGGATCCTCCCTATAGTGAGA
GenBank Accession BX649793 [GenBank]
Graphic View Graphic view of gene At5g59090
Predicted Position of Insertion Chr5:23852897 - go to primer design
BLAST e Value 3e-45
Hit Clone Code (BAC ID) K18B18
Hit Gene Code At5g59090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation subtilase 4.12
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37