SimpleSearch - Line and FST details
Line specific information
| Line ID | 239H12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N422944) |
| Segregation Analysis | 50:14:10 |
| Confirmed for Hit | At3g27320 |
| Parent of DUPLO pair | 1880 |
| Parent of pair(s) | none |
Gene hit At3g27320
| Sequence (A. th genome BLAST matches underlined) | >96-K014365-022-239-H12-8409 TGATCCATGTAGATTTCCCGGACTGAAGAACTCTATCCTTTGAATCTTTCCTGATGTCAA ATAGATACCGGATTCAACCATACTAGGGCAGAAAGAATAAGCTAAGAGGAGACGCTTCTG TGGGAACCTCCCTTGGCTGAGGGTAATAAAATTTTTGAGAATGGTGGCTTTCATATGACC AAAAATCTTACTGAGTTCTGGGACTTCTCAAAATTTGAAACTTCAAATGGGGGCTTCTGG GGGGGAGCTGGGGGGCCAATATAGCAAACTATGTACCCCGCAAAGCCATTGAAGTGGGTC AAAATCTATGGGATCCTCCC |
| GenBank Accession | AL938991 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:10091686 - go to primer design |
| BLAST e Value | 3e-20 |
| Hit Clone Code (BAC ID) | K17E12 |
| Hit Gene Code | At3g27320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alpha/beta-Hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MSN9
| Sequence (A. th genome BLAST matches underlined) | >96-K014369-022-239-H12-8409 TTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACACATAAAACATTATATACCCA CTCGATCTTGATTTGATTGCACATAAACAGAATAAAGAAAAAGATAATCGCAGAATAAAC AAGATGATGAATTACAACTCACTATGGGATCCTCCCTATAGTGAGAGGGGCTTTAAAAGG ACCAAAAACCTTACGGGGTTCTGGGACTTCTGAAAATTGGAACCTTCGAAGGGGGGCTTC TGGGGGGGAGCGGGGGGGCCAATATAGCAAACTATGTACCCCGCAAAGCCATTGAAGTGG GTCAAAACCTATGGGATCCTCCC |
| GenBank Accession | AL938992 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:16087870 - go to primer design |
| BLAST e Value | 1e-28 |
| Hit Clone Code (BAC ID) | MSN9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
