SimpleSearch - Line and FST details


Line specific information

 
Line ID 241E09
Vector Used pAC161
Line Availability available as T3 set from NASC (N423097)
Segregation Analysis 50:36:27
Confirmed for Hit At3g18215
Parent of DUPLO pair none
Parent of pair(s) 2724

Gene hit K17E12

 
Sequence (A. th genome BLAST matches underlined) 
>69-K014367-022-241-E09-8409
CTGATCCATGTAGATTTCCCGGACCATGAAGCCTTTACAATTGTCACTGGATGCCAAATT
TTGGTGCAATTTTAAGTTTAAACATACAATAATAATTCCCGACGATTGACATACATAGAT
TGATTGATACATATGCCATCTGTTTTGTTCTGCCGACTCTTGCGTTAAGCAAACTTGTAA
TTATTGATTTTTATATTGATAAAGCATGTATGAAGCTATGGGATCCTCCCTTAGGTGAG
GenBank Accession AL939778 [GenBank]
Graphic View Graphic view of sequence AL939778 of line 241E09
Predicted Position of Insertion Chr3:10049604 - go to primer design
BLAST e Value 2e-73
Hit Clone Code (BAC ID) K17E12
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g18215

 
Sequence (A. th genome BLAST matches underlined) 
>69-K014371-022-241-E09-8409
CTGATCCATGTAGACTTTCCCGGACATGAAGCACTTTACTCTTGTCTCTGTTTGCCGTAT
GTTGTGGCTCTCAGTATGGGTACAATAGCGGTGGATGATATACAGACCATGAGATCGATG
CCCATGGGAACGTCTCAGAATTCGTCGCGCAAGACTATCGTCTACCTCTCGCCTAACGGA
CATATGGGATCCTCGATATTTACAGAAGATAATGCCTGTATGATCCTACGTTTNCCGCGC
TATAATGAGCTCGTCATCTTCAAAATCCACGGCAACAAATCTCATATACGGGAGCAAAAG
CCCTCGCTTAGCGTCATTCAAGAACTTTGCAATCCTGATCTGTCTCCTCATGGCCTTTCT
CTGCCACATCCA
GenBank Accession AL939779 [GenBank]
Graphic View Graphic view of gene At3g18215
Predicted Position of Insertion Chr3:6241717 - go to primer design
BLAST e Value 2e-58
Hit Clone Code (BAC ID) MRC8
Hit Gene Code At3g18215 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (Protein of unknown function, DUF599)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37