SimpleSearch - Line and FST details
Line specific information
| Line ID | 243A01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N423233) |
| Segregation Analysis | 50:50:44 |
| Confirmed for Hit | At3g23780 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12058 |
Gene hit At3g23780
| Sequence (A. th genome BLAST matches underlined) | >46-K033040-022-243-A01C-3144 TCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGAC AGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGATTGTCCA CATGTCAGAGGACAAAGTCAAGTTCAGGAACACTGGACCAGTCCACCCGCTCACACGCCA GCCAGTTGCAGACAGGAAGAGATTTGGCGGGATAAAATTTGGAGAAATGGAGCGAGACTG CCTAATAGCTCACGGTGCATCAGCTAATCTGCATGAGCGTCTCTTCACTCTAAGTGACTC TTCTCAGATGCACATCTGCAGAAAATGTAAGACCTATGCGAATGTGATCGAGAGGACTCC AAGCAGTGGAAGAAAGATTAGAGGGCCATATTGTAGAGTCTGCGTATCCTCAGACCATGT GGTTAGGGTCTATGTTCCGTATGGAGCTAAGCTTCTGTGTCAGGAGCTGTGTCAGGATAT ATTCAATTGTAAATGGCTTATTGCCTTAAGACCATGTTATGTGTAGTTTGCTTCAGTCCC GGTTCTGGTTAGTAGTATAGGTTTTGGTTTGGTTGATTCGGTAAGGGTTATCCGAACCGA AGAAATCGTAAAACCGAGCCACTGATGACTGAACTAACCCGTAAGTGTTGCTTTTGTGAG ATTTGACTCTTTAACCGTTAATAATTCTCGGATCTAAAGTAAAGTTTTAGGAAAACTTTC ATTGTCTTCTTCTTCTTCCGGAGGCATAAACCCCTTGCTCGGAGTCGTT |
| GenBank Accession | HG968841 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:8568371 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MYM9 |
| Hit Gene Code | At3g23780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear RNA polymerase D2A |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HG968841 [GenBank] |
Gene hit At5g27730
| Sequence (A. th genome BLAST matches underlined) | >01-K014389-022-243-A01-8409 CTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATACAAAACCA TATTTGACTGTCGAACATATGTCAGTCCGTAACGGGTCTTCTTTGGTCGTCTTGAGGAAA AACCCAATATTTATTAAACGATCACGTTAAGAATTTATTTTATCTGTCGTCTGCTTCCTT CATCATCTCTCTGTCTCCATCGCGTACAACAGGAGCACAAACCATTAGTTTTTAAAAGTG TCTATATCCTCTCTCAATCGAACTGTCGCAGAAAAAAAATATAAGCTTTGCCGAGTGGAA AATTCCCGGTGAAGCCGGCCCGAGTGACTCGGGCTCTTGCCCGGTGTCTTTGAGCTCCGA TGGAGGAGATCACCGGTTTAGGTCGAGCCAATCCACTTTCCATAGGGGGCGAGGAGTGGG TTTAATCTTTGGTCCAGGAAATCGGATTATCACCGAATGCTTCACTTCTTACCGATGTTG ACCCTCAAGAATCCCCAAAAAGCAGAGCCGGCCATTAGTTCAAAGAGCTACGGGAGCCTC CGTTAAGAGGAGTCANGAATCANCCATAATCTAAGAAAGGGTAAATGAATTATACATAGA TCACAAGGCTCACCGCATCAATCCTCTAACTAAATATATACTGGTACCTGACTGTTGAGC CC |
| GenBank Accession | FR806385 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:9819220 - go to primer design |
| BLAST e Value | 6e-77 |
| Hit Clone Code (BAC ID) | T1G16 |
| Hit Gene Code | At5g27730 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
