SimpleSearch - Line and FST details


Line specific information

 
Line ID 244D12
Vector Used pAC161
Line Availability available as T3 set from NASC (N423376)
Segregation Analysis 50:48:46
Confirmed for Hit At5g14870
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g06600

 
Sequence (A. th genome BLAST matches underlined) 
>92-K014397-022-244-D12-8409
CTGATCCATGTAGATTTCCCTGACATGAANGCCTTTACACTTGAATATAGTCCTGAAATA
CATTCACCCTATCGAATCCTGCCTATAGTGACGAANNGAATGCCTCTACCCAGCTGTGCC
TTCGTTTATTGAATATGTCCAGAATAGACAGGTAATTCTACTAAGCACTGTTTCCTATGG
GATCCTCCCTATAGTGAGATACACACGGATCCAATTCTCCCCCCCGCCTTTTATATTCAT
TTCTATGGCACACACGCTTTTTCCCCCCCCCCCCCAACCCCCGCTCTCCCCCCGATCGGC
GGGGTTCACTCTAACCCCCCCCCATCATCCCCCCCCCTCTCTCCCCCCCCCCCATCTTCC
CCCCTCATTCAACACCCCATTACCTTCATACCCCTCCCACCGCGCCGTCCCCTCCTCTTT
TCTTCCCCCCGCCCCTTCCCCCCCTTCCCCCGCTTCCCATTCCCATTTCCCCCCCCCCCC
CTCCACTCCCGAATTTCCTTCACCCCATACCTCACCGCCCCACCACACATCCACCCCTTT
GCCGCTTGTCACTAACCTTCCCATCTCTACCCCTCTTTCCCCCCCCCCCCCCGTTCATAT
TCCCCCCTTCCTCATATCCCCCCTTTCCCTCCTCCATTATTTCCCCCCCCCTATTTTCTT
ATCACCCAATATCCCCCCCCCACCCCGACTAAACTTTTCCTCTACCCAACCCACCTCATA
ATCATCTCCCCTCCCTCCCCTTTTTTCTGCTCGCCCCTCTCCCCCCCTCCCTTCTTCTTT
TTTCCTTTACCCCCCCCACCTTTTCCACCCCCCCTTATCACTCCTCCGCCCCTCATATCA
TCTTCTCCCCATATTAATATCTCCTCCTCTCCCACCACCATATCC
GenBank Accession AL940106 [GenBank]
Graphic View Graphic view of gene At5g06600
Predicted Position of Insertion Chr5:2022107 - go to primer design
BLAST e Value 4e-35
Hit Clone Code (BAC ID) F15M7
Hit Gene Code At5g06600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ubiquitin-specific protease 12
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 244E11

Gene hit At5g14870

 
Sequence (A. th genome BLAST matches underlined) 
>92-K014390-022-244-D12-8409
TGCTGCTTGTAGCATTACAATGTTAAAGGACCTGAGTAACGAACTGCCAATACTGGCGCT
CTAGGATGTTGTATATTTTTGCAAACCAAAATTCTCTCGAAAAATCCCTATGGTGTGTTT
TTTTAGGGGGACGTTTTTTT
GenBank Accession CT026198 [GenBank]
Graphic View Graphic view of gene At5g14870
Predicted Position of Insertion Chr5:4809717 - go to primer design
BLAST e Value 6e-15
Hit Clone Code (BAC ID) T9L3
Hit Gene Code At5g14870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cyclic nucleotide-gated channel 18
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CT026198 [GenBank]


Last Updated on 10.06.2021 13:37