SimpleSearch - Line and FST details
Line specific information
| Line ID | 250C01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N423929) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At5g16080 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g16080
| Sequence (A. th genome BLAST matches underlined) | >03-K014486-022-250-C01-8409 CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAACATTTTAAATCTATTAGAG GTTTCCTAGAAAGGTCGTGATGGAATTGTGAGAGAAGGATGTACGAAGCTGTGAAGACGA CACATCATGACGGGGATTCGATCACGTGACGCCGACCAGTTGTCGGACATTGTGATTAGC GGGACCAACACCTACATGAAGCATGCCTATAACTCTATTTCGACGGCTGCTCATCAATTT ACTCTTCTGCAAGTGACAAACATTGAGTATATCAAACTCCGCCATGAACACCATCGTCGA CGGTAACTTCGCTCCCGCCGAGCTCATCAGAGGGTTACCCATGGATGGTCTCTACTCGCT CCACGTGGCAGAGCTATGGGATCCTCCCTTAAGGTGAG |
| GenBank Accession | AL940650 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5252482 - go to primer design |
| BLAST e Value | 3e-66 |
| Hit Clone Code (BAC ID) | F1N13 |
| Hit Gene Code | At5g16080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | carboxyesterase 17 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g52670
| Sequence (A. th genome BLAST matches underlined) | >03-K014490-022-250-C01-8409 AATTTGATCCATGTAGACTTTCCCGGACATGAAGCCCTTTACAATTTGTTAATTCTGTCA CAGGTACCCTAGGAAGGTCGTTATGGAATTGTGAGGAAGGATGCACGATGCTGTGAAGAC GACACATCATGTCGGGGATTCGATCGCGTGACGCCGACCAGTTGATGGGCATTGTGCAAA GCGGGACCAACACCTCCACGAAGCATGCCTTTAACTCTATCTCGACGGCTGCTCATCAAT TTACTCTTCTGCAAATGACAAACATTGAGTATATCAAACTCCGCCATGAACACCATCGTC GAAGGAAACTTCACTCCCGCCGAGCTTATCAGAGGGTTACGCCATGGATGGACTCTACTC GCTCCACGTGGCAGAGCTAGAATAACCACTTAAGTTATCTGTCATACGGTGGTAATCTCA TATTTTTTGTAGAATCCTTAAGAGTTGAGAACTTTCAAGAACAGTTAAGTTTAATAATAT TTTAATCTTTGTATAAGAGATTTCTTCATTCTTTTAGAACCACCACACCTTGTGATCGAC CATTCATACGTACCTATTCGAGATTTAATTTGTTTTTCCTTATATAACAAATCAATAATC TTATTGAATATGACCAATTTATTAAATAAAAACCC |
| GenBank Accession | AL940651 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19617688 - go to primer design |
| BLAST e Value | 1e-108 |
| Hit Clone Code (BAC ID) | F6D8 |
| Hit Gene Code | At1g52670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Single hybrid motif superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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