SimpleSearch - Line and FST details
Line specific information
| Line ID | 251G03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N424075) |
| Segregation Analysis | 57:17:13 |
| Confirmed for Hit | At2g38220 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 58400, 92263 |
| Note |
Gene hit At2g38220
| Sequence (A. th genome BLAST matches underlined) | >28-K020163-022-251-G03t-8409 TACACCGCAAAGGATTTATAAGTTGCTCCGATATCTCTCATTGTGGCGAAGTACTGAGTC ATCATCACCATGTCCAACACATCCTTCCCTGACGACCCTGGCACGTTTCCTGCGAACCCT ATGGGATCCTCCCTATAGTGTAGATAGACAAAGATCAGATCTTTGGTTTCAATGGCAAGT ACCCAAAACAATACAATAAAGATCCTAAGGAATTTTAAACCTGCCTTGTAAGAATTCTGT GAGACAGATAACACTCGAGATTCAGTCCAGTTTACAAAATAACCACTATGGGATCCTCCC TATAGTGAG |
| GenBank Accession | BX530847 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:16008979 - go to primer design |
| BLAST e Value | 8e-74 |
| Hit Clone Code (BAC ID) | F16M14 |
| Hit Gene Code | At2g38220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530847 [GenBank] |
Gene hit At3g19030
| Sequence (A. th genome BLAST matches underlined) | >23-K014552-022-251-G03-8409 NTGATCCATGTAGAATTTCCCGTACATGAAGCTCTTTACAATTGAATATATCCTGATTAT TTACACATGTGGTTTATTCAAGTCTACATCCATAGTTATAATAAACTACATCCATTTACT TACACATGTATGTAAAGAAATGCCCCCAAATAATATTGGCTATGGGATCCTCCCTATAGT GAGAGANAAAANNAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCG CAGCGTTATTATA |
| GenBank Accession | AL940795 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6564720 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | K13E13 |
| Hit Gene Code | At3g19030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transcription initiation factor TFIID subunit 1b-like protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At4g22840
| Sequence (A. th genome BLAST matches underlined) | >23-K014555-022-251-G03-8409 NTGATCCATGTAGATTNTCCCGGACATGAAGCTCTTTACAATTGAATATATCCCGAAAAT GGACGCATGTGCGTTTGTTTTGATCCTTATGCAGAAACAACTTGTGGACTTTTCTATTTG CTTGCTCGTAGCTAGTATCTCTCACTTGTCTAATAGCAATCCTGCTGCGATTGTCGCTAT NACAACCTGAAGAATGCTGGATATCATTCCTTTTACATCGACGGGTAGTTTCTTCCCAAT GAGCAGGAGTGATAGCATCGGTGTGACAAGAACCGCAGTAGCCGGTGATAGAGATGTCAT GACGATGCCTAAGAGGTGCCAATGCTGGATCAGATAGGAATGTCGCATTAGTTGACAACT GAGCTCCCCTACCACGTGATACCCCCATGATTCCCGCACTTGAGAGATCGAGAATGATTG GTCAATGTGACAGATAGGTTAAGAGCCTCGATCGATGGAGACCAGGGCGCCCCTCCCCAT TTGGTCCTGGGAGCCGCCACAGGAAACCAGCCCGCCGCCTTACGTGAACATAGGGGATAA TCCTCAGGTNNNNNNCCCCCCCCCTCCCCCGTCCATCTATCGTCCCCCTTTCCTTTCTCT CCTTTGTT |
| GenBank Accession | CT026202 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:11992225 - go to primer design |
| BLAST e Value | 9e-113 |
| Hit Clone Code (BAC ID) | T12H17 |
| Hit Gene Code | At4g22840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Sodium Bile acid symporter family |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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