SimpleSearch - Line and FST details


Line specific information

 
Line ID 253C03
Vector Used pAC161
Line Availability available as T3 set from NASC (N424219)
Segregation Analysis 50:37:27
Confirmed for Hit At3g55060
Parent of DUPLO pair 12223
Parent of pair(s) none

Gene hit F26G5

 
Sequence (A. th genome BLAST matches underlined) 
>19-K014578-022-253-C03-8409
CGAGACATTGAAAGGAATGGCCGAGAAATTGGATGACATGGTCTTATAGAAAGCAAGGAG
AGATCAGCAGCTACTACAAGACACATTCGGAAGCAAGCATCTGAATCTCCTCTCACGTCC
TGATTTCTTGGTATAAGGGTTTTTCTTTATCTTTGGTTCTTAGACGATGGGTCATTCTTT
GGGGCTTAGTAGATATGATTGTTTCTTCTTTTATTACTACTCTTCTTCTTTAGGATCGCT
TATGCTAAAGCTGGATTCTCACTATGGGATCCTCCCTTAAGCGGAGAATGCATGGACTAA
AAAGAGAACCCAAATCTTCATTGTGATGATCCCCCTTGTGATGCTCTTACTTGAGAAGAG
CCTCCTTGTGATGATCCAGCTTGAGAATATCCCTCTTGAGAAGCTCCAACATGAAATGAA
TCTCCCTAAAATCAAGCAAACCCTTAGACCCATTAAGCAAACCATTACACCCCCAAACAT
TTAATCAAATCATTAGCTCCACCAAAAAACTACTTACATAAATACCATGTTCTTTTCTTG
GACGACCCCTCTGGTCGGGGTGCTTGAGGAGGGGC
GenBank Accession AL940928 [GenBank]
Graphic View Graphic view of sequence AL940928 of line 253C03
Predicted Position of Insertion Chr3:15912542 - go to primer design
BLAST e Value 1e-130
Hit Clone Code (BAC ID) F26G5
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g55060

 
Sequence (A. th genome BLAST matches underlined) 
>19-K014574-022-253-C03-8409
NTGATCCATGTAGATTTCTCAGACATGCAGACCTTGACTGGATTCGGTATATAACTCTGT
AGTGATTAAGACACTATTAGACAGAAGGGCAATCACACTACTACCTTTACTCAGTCGGAA
CCATGCATATTGAATTCTCCACCCAAGTTCTGCATTTCCTGCGTTTAACAGGCTCTGATG
TATAAAAGGATCTTAGACGAGGGGACATTCTATAGGGGCGGATAGATATGATTGTATACA
AAAACAAACATGGCATATGTTGTATTGGATGGCTGAAATACCAGATGCATGAGGTCTATG
GAATCCTGGGTGAGAGCGGATAGGTTGTCTAAACTGCTTTGGACCTCACATCTCAGAATC
TCATTACCTCGTACTGCTGCTGCTATGGGATCCT
GenBank Accession AL940927 [GenBank]
Graphic View Graphic view of gene At3g55060
Predicted Position of Insertion Chr3:20403375 - go to primer design
BLAST e Value 8e-30
Hit Clone Code (BAC ID) T15C9
Hit Gene Code At3g55060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CAP-gly domain linker
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37