SimpleSearch - Line and FST details


Line specific information

 
Line ID 255C11
Vector Used pAC161
Line Availability available as T3 set from NASC (N424419)
Segregation Analysis 50:37:30
Confirmed for Hit F14J16 At3g05560
Parent of DUPLO pair none
Parent of pair(s) 8035, 8095

Gene hit F14J16

 
Sequence (A. th genome BLAST matches underlined) 
>83-K014580-022-255-C11-8409
TGATCCATGTAGATTTCCCGGGCATATACTTTTTAATATTATTATCTATGTGTATCCTCA
GCTATTAATTCTGCCTATGGAATCCTCCTATAGTGAG
GenBank Accession AL941166 [GenBank]
Graphic View Graphic view of sequence AL941166 of line 255C11
Predicted Position of Insertion Chr1:20949486 - go to primer design
BLAST e Value 7e-15
Hit Clone Code (BAC ID) F14J16
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences

Gene hit At3g05560

 
Sequence (A. th genome BLAST matches underlined) 
>83-K014576-022-255-C11-8409
TGATCCATGTAGATTTCCCGGGCATCATACTTTTTACTATATTATCTATGTGTATCCTCA
GCTATTAGATTCTGGCTCTGGGATCCTCGCTATAGTAGAGAGCTTTGAACAATCAATGGA
GAAGGAAACTCCCTTCTTCTTTCCCTTGGCAACAGCTGCACCTCCACGACTCATTTTCCC
AAGACTTCTCTGTGAAATCCAAAAAACAACTCCATAAGACTGTGTCTATAGATCATTGAC
AAATCATACTGATACAAATAAAGAAGCCTATATTCTCTATATACTTTATAAGCCATTTTC
TATGGGATCCTCC
GenBank Accession AL941165 [GenBank]
Graphic View Graphic view of gene At3g05560
Predicted Position of Insertion Chr3:1614756 - go to primer design
BLAST e Value 3e-100
Hit Clone Code (BAC ID) F22F7
Hit Gene Code At3g05560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal L22e protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37