SimpleSearch - Line and FST details


Line specific information

 
Line ID 256A08
Vector Used pAC161
Line Availability available as T3 set from NASC (N424488)
Segregation Analysis 50:28:19
Confirmed for Hit At3g54040
Parent of DUPLO pair 1359
Parent of pair(s) none

Gene hit At1g03920

 
Sequence (A. th genome BLAST matches underlined) 
>57-K014920-022-256-A08-8409
TTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAAATCGTCGTTGACCTCACGA
ATGAACGCATCTTCCATTTGGTAAATCTTTTCCCATTGACACCTTCGAACCAGGATGTGC
CTGCATGTGACATTATGAGGTTAGGATCAACTCCACTTATGACATTTGTGGGCTTAAATC
TTTTCAACTATTAACTATATATTGGAACTTTTACTATACAACAAAAAAGGAGAAAGATAC
CTTAATTTGGGAGGCACCAGTAGAGCCTATGGGATCCTCCCATTAGATGATGACCNAACC
GCTAGAATCCTCTTCATACGTGAACTACCATCGCNCACCATTATAACTGAATTCAGGCGA
GGATAATAAGCTAACCTCATTCTCAATCACGGCTATTCGCTTCCCATGATCTCTGGTCAG
TATATGATTCAGCAATGTTGTCTGTGGAAAAACAAAACATTGCAGTATAATTAGGCCAAC
ATTTCTTTTACTTAACAGGGCTAATTTTAAACCCTATGGGATCCT
GenBank Accession AL941260 [GenBank]
Graphic View Graphic view of gene At1g03920
Predicted Position of Insertion Chr1:1003472 - go to primer design
BLAST e Value 2e-95
Hit Clone Code (BAC ID) F21M11
Hit Gene Code At1g03920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g54040

 
Sequence (A. th genome BLAST matches underlined) 
>57-K014917-022-256-A08-8409
NTGATCCAATGTATGATTTACCCGGACGATGAAGCCTTTACAATTGAATATATCCTGTAC
ACTATGTACACTATTATTTATTTATTTACGACCAACGTACACTATTACATTAAAAAAATA
ATTGAGTTAAGTGAAACATAACCATCTATAGCTCCTACCGAAATTCCTTGCTTTGAAGAT
ACGAAATACCGAAAAAAACATGAAAGTGAGTTTCGTGTGTAAGAAACACGAGGAATCTAC
AAAAACAGACAAATATTCGATTCTTACTTCATTAATAAGCCATGATAAAGATCATAATTT
ACACACTTTTTACTTTTCTATGGGA
GenBank Accession AL941259 [GenBank]
Graphic View Graphic view of gene At3g54040
Predicted Position of Insertion Chr3:20014225 - go to primer design
BLAST e Value 8e-104
Hit Clone Code (BAC ID) F5K20
Hit Gene Code At3g54040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PAR1 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37