SimpleSearch - Line and FST details


Line specific information

 
Line ID 259H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N424854)
Segregation Analysis 50:44:39
Confirmed for Hit At1g62330
Parent of DUPLO pair none
Parent of pair(s) 2767, 65340

Gene hit At5g27505

 
Sequence (A. th genome BLAST matches underlined) 
>16-K014923-022-259-H02-8409
TAGATTTCCGGAAGTTTTCTTGTTTTACTTTACCCTGAGATGAGAAGTTCTTGAAAGGCC
CTATGGGATCCTCCCTATAGTGAGAAACTAAACCGAATAATTGCATACTTTTTATTTCTG
GTTATGTAGCTAGCATGGTTAGGTGGTCTACCAGGATTTCCTTTCCTCCATGATGGTGGC
AAGACTCCTAATCTATTCATCCTAGCCATTCTATCTGACCTTGAACAGGCTCAATACCAT
CTGCATACGTTAGCTGCCACATTCTTGTTGTGTACCATTCACTAACATAATCTTCAACCT
TCTGCTTCTTTGCTATGATCACTGAAGCAGCATGAACAAAAGGAATATCAGTCATCTGCC
ACTTAATGCAGCCGCATGTAAGCTTGTCCATATCAACAGAATATTTTTCATCATGCAACT
CTACCTCATGTTTATTGTGCCTATGGGATCCTCCCTTAAGNTGAAGACGGNCACACTATC
TAATCACGTCACTTGATGGAGCTGGGAGCATACTAAATAGATAGCCTATGGGATCCCTCC
TGAAAGGGAGGACTCGATANTAGCTCGCCCACGGAGAAGTTTAACTTTGACATCACGGGC
TGTGGGACCAACAAAGGGGGAGGGTCTT
GenBank Accession AL941675 [GenBank]
Graphic View Graphic view of gene At5g27505
Predicted Position of Insertion Chr5:9710971 - go to primer design
BLAST e Value 3e-177
Hit Clone Code (BAC ID) F15A18
Hit Gene Code At5g27505 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At1g62330

 
Sequence (A. th genome BLAST matches underlined) 
>16-K014916-022-259-H02-8409
TTTGATCCATGTAGAATTTCCCGAACATGAACTCACTTTACAATTGAACATACCCATCAA
AACTTCGCTCAGGCGGCTATATCAGCCAACCTTACTCCGCTAAACTAAACCGAAGAATTG
CATATTTTTCTTTCTGGTTACTGTAGCCTATGGGATCCTCACTATTAGTGAGACNCACCA
NCNACNANNNCCCGTGTNTTCCGACTAAAACCCANACCCGCAAGCATAAGCACGGCTTCT
TCAGGTGATAAAGGACAAAGTCCTTCTGTCCTCAGATCGTCTGGAGATGGCATTCTGCAT
AACAGAAAACAAAAGGGCATTCAGTGAGATACCAAAACTGAAATAATAATGTGAAAAAGA
GTTAAGAGAGGAAAGGAACAAACTTTTGCGTCTTTGTTAGATTTGCCAACGTCGGGAAAT
GCTTTTCCCGGTAAGCATCAAGCTCTGCCTTTTCCGCATCACCTCCTCCGAAGTAACAGA
GAGAATGAGCCACCATATCAATTTCAAACCTGAGATGGACTGCTATGGGATCCT
GenBank Accession AL941674 [GenBank]
Graphic View Graphic view of gene At1g62330
Predicted Position of Insertion Chr1:23049630 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F24O1
Hit Gene Code At1g62330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation O-fucosyltransferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37