SimpleSearch - Line and FST details


Line specific information

 
Line ID 261G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N425040)
Segregation Analysis 50:20:19
Confirmed for Hit At1g05540
Parent of DUPLO pair none
Parent of pair(s) 6812, 97174
Note

Gene hit At1g05540

 
Sequence (A. th genome BLAST matches underlined) 
>63-K014925-022-261-G08-8409
NTGATCCATGTAGAATTTCCCGGACCATGAAGCCTTTACAATTGAATATATAATACTTAA
CTGCTCGGCACAGACAGCTTCTGCTCCTCACTAAGAACATAGAAGAAAAACACTCGTCGT
CGGGACTATCATATTTGTTGGATAGCCAACGTGATTGTATGCAAGCCGGCCACAAGTTAT
CGTCTATCGAACGAGTATATAGCTTGCACTTTCTTTCCTTGATTAAGTACTACTGATCAT
ATAAAGTAAAGCTATGGGATCCTTCCTAAACTGAGCATAACGCACTGGTAGCCGGGGGAA
CGCCCGATGTGGAGGTATCATCCTCTGCGCTGACCACAATTAGCGCTATGGGATCCTCCC
ATNACAGAGCGAGTGGGAGCTGCTGAATTCTTGTTTCAAGGAGGACCATTGGGTGGAGTC
ACCTTCCGGCCAAAGTTTCTTAGTCAAATGGTCACGTGCGAGTCTAACATGTAGACAGAA
ATCTTGGTCACTGCTAATTCGGGTCTTATATGCGCGCGCAGGAACTCTCACATGCGTTTT
CAGCCATACAAAGATCCGACATTGA
GenBank Accession AL941904 [GenBank]
Graphic View Graphic view of gene At1g05540
Predicted Position of Insertion Chr1:1639923 - go to primer design
BLAST e Value 9e-76
Hit Clone Code (BAC ID) T25N20
Hit Gene Code At1g05540 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF295)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g14700

 
Sequence (A. th genome BLAST matches underlined) 
>63-K014950-022-261-G08-8409
TGATCCATGTAGATTTCCCGGACTGAACACCTCTACAAACGCTAAATAATCTAAAATACT
AGCTGACTCATACTACAACCATAAAAACCCTAAAACACCTATGGGAACCTCTCCTATAGT
GAGACCTAGTCCAAGAAGAGGGACTCCACGAACCTATGGGATGCTCCCTATAGTATGACC
ACAGTTGTTATGACCTACCACAAAGTATACTTTGCACGAAGAAGATGGATATGACTCACG
ATCTAAAGGAAGAAGGCGCCTGATGAATGTATATGCTACCTGGAAACTCAAATAGTACAA
TTAACCTATGGGATCCTCC
GenBank Accession FR806744 [GenBank]
Graphic View Graphic view of gene At2g14700
Predicted Position of Insertion Chr2:6294506 - go to primer design
BLAST e Value 0.001
Hit Clone Code (BAC ID) T6B13
Hit Gene Code At2g14700 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 261F08


Last Updated on 10.06.2021 13:37