SimpleSearch - Line and FST details
Line specific information
| Line ID | 262F03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425119) |
| Segregation Analysis | 50:42:27 |
| Confirmed for Hit | F22D1 At5g23430 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F22D1
| Sequence (A. th genome BLAST matches underlined) | >22-K014926-022-262-F03-8409 TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTGCATGACATCGCAACATATCGCA GATCTGGCCCCATAGACCTCTTTACCTGAATTACCCACCATTCTATGGGATCCTCCATTC ATTTGAGATCCTGCCTATAAACAGATCAAAATGATAATTTTGTAGTAGTTAAATGATATT AAATATTGCGGAAGTTTTATTTTAATAACTAATCGTGTAGTTAATGTGAAGAGATTTTGG GAAGATTGTCAAATATTTAATTCAAAGATTTTCTTTCTAATTATCAAAAACAATTATTAA ATGCCAGTGGCAGCCACTGTAAATAAATTCCAACTCTATGGGATCCTCC |
| GenBank Accession | AL942012 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:7070310 - go to primer design |
| BLAST e Value | 8e-101 |
| Hit Clone Code (BAC ID) | F22D1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g23430
| Sequence (A. th genome BLAST matches underlined) | >22-K014951-022-262-F03-8409 TTTTGATCCATGTAGCATTTCCCGGACATGAAGTCCTTTACAATTGACATATATCCTGTA AAAGAATTTACCGGGAACCTTTTTTTTTATCTTTCTGTGTGTTAATGGATCTGATATGCA ACTTGTCTTTACCTGGTTTGGGATTATAACAGCTGGAAAACTGCTGACCGAGTTTATATA GTCATGAAGGGCAAATTCAAAGCCTATGGGATCCTCCTTTGAGTGAGAAAACTTATTTAT ACCAAGGAAAAAATAGATAATAAATTTTGAGAAGTTGGTGACTATATATTACTTCACTTA TTCAAGAAATTTAAACATGGTAAATGTTACTTTAAATGTTAAATGATGTATAAGAAATGT AATGAAATTGAATAAATGTAGGTTTAAAGATGTTTTAATTAGTAAGACAAACCTATGGGA TCCTCCCTTTAGGTGAGAGNNNCNCCCCCCCCTCCCACCCCACAACAGGCGCGAGATGGA GCGGGGGACAGAGTATGATACCGGCACGCCAAGTCAGCACGACGCAAATCCCATCATACG CCCGCCCCCCCCCCCATCATTTCCCTTCCCGCCCCCCCCCCGAAACCCGTTCATCGCGCT TAGACCGCCCGCCCCCCGTGTCCCCCTTGGAGCGACGGCAGCAGAGCGGCGGCGCCGCGT GAGGGGGGGCGAGGGGGGGCAACGACGGGGGTAGCGAGACGGAGGAGAGCAGAGGAGGAA GAATTCCAGAGAGACGACGGGCGGCGGCGGACGGCCGCGCCGCGTCCCCCGCCCACGACA GCCCCCCCCGGCTCCGGTAGCGCCCGACCCGCCCCCCGAGGCAGCCTACTCTGCCCACGG GTGCCGACAGCAAGACAACAACAATC |
| GenBank Accession | AL942013 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:7898390 - go to primer design |
| BLAST e Value | 2e-43 |
| Hit Clone Code (BAC ID) | K19M13 |
| Hit Gene Code | At5g23430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T23K3
| Sequence (A. th genome BLAST matches underlined) | >22-K014951-022-262-F03-8409 TTTTGATCCATGTAGCATTTCCCGGACATGAAGTCCTTTACAATTGACATATATCCTGTA AAAGAATTTACCGGGAACCTTTTTTTTTATCTTTCTGTGTGTTAATGGATCTGATATGCA ACTTGTCTTTACCTGGTTTGGGATTATAACAGCTGGAAAACTGCTGACCGAGTTTATATA GTCATGAAGGGCAAATTCAAAGCCTATGGGATCCTCCTTTGAGTGAGAAAACTTATTTAT ACCAAGGAAAAAATAGATAATAAATTTTGAGAAGTTGGTGACTATATATTACTTCACTTA TTCAAGAAATTTAAACATGGTAAATGTTACTTTAAATGTTAAATGATGTATAAGAAATGT AATGAAATTGAATAAATGTAGGTTTAAAGATGTTTTAATTAGTAAGACAAACCTATGGGA TCCTCCCTTTAGGTGAGAGNNNCNCCCCCCCCTCCCACCCCACAACAGGCGCGAGATGGA GCGGGGGACAGAGTATGATACCGGCACGCCAAGTCAGCACGACGCAAATCCCATCATACG CCCGCCCCCCCCCCCATCATTTCCCTTCCCGCCCCCCCCCCGAAACCCGTTCATCGCGCT TAGACCGCCCGCCCCCCGTGTCCCCCTTGGAGCGACGGCAGCAGAGCGGCGGCGCCGCGT GAGGGGGGGCGAGGGGGGGCAACGACGGGGGTAGCGAGACGGAGGAGAGCAGAGGAGGAA GAATTCCAGAGAGACGACGGGCGGCGGCGGACGGCCGCGCCGCGTCCCCCGCCCACGACA GCCCCCCCCGGCTCCGGTAGCGCCCGACCCGCCCCCCGAGGCAGCCTACTCTGCCCACGG GTGCCGACAGCAAGACAACAACAATC |
| GenBank Accession | AL942013 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:368970 - go to primer design |
| BLAST e Value | 8e-101 |
| Hit Clone Code (BAC ID) | T23K3 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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