SimpleSearch - Line and FST details
Line specific information
| Line ID | 264F05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425313) |
| Segregation Analysis | 50:28:23 |
| Confirmed for Hit | At1g50140 |
| Parent of DUPLO pair | 384 |
| Parent of pair(s) | none |
Gene hit At1g50140
| Sequence (A. th genome BLAST matches underlined) | >38-K114614-0022-264-F05-8409 GGCTTCATGACAACACCGGATTCCCAATCTTATATATCCACCACAAGTATACTAACAGAT CATTTGAGAATAAACCATCATTCTCATGGTGCTATTGCCTCTAACCTGCCCGGCCGCATA TCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGACC ATCATACTCATTGNNTGATGNTGTGNATCTAAAANNNNNNNNNNNNNTTTNNNTTTNNNN GNNNTGNNNNTNTTTTTTTTTTTTNTTGGGNNNNTTTTGTTTNNTGGTGTTTTTTATAAN NTGAGAGGGGGGTTTAGAAAAATTTTTCGTGTGGGTGTGGTTATTTTNGNTATTCAAAGA AATATTAAATTATNGTTGTGATTGTTAGTTAGTTATAGGGTGTTATAGGGTATTATGAGA AAGAAATTTATAATGTAGGTTATATGAGATATTTAGATTGGGTTTAGTATGATTTGTTTG TTAATGATTTTGGGATTTGGATTATTGTGTTTGTTTGTTTATAATAATGATATATGATAT AATATAAAGTTTTATTTATGTTAAGATAGTAGTATAGAATATGAATTTTGTATATAATAT ATAGGTAATGAAAGTATATATATATTTGGATTGGTAAGTTATTGTGTATGAATTGGATTT ATTATATTAAAAATTGGGTATATTGTGATTTTGTTATATAGATGTTAGAGATAATTATGT AATTATGTTAAGTTAAAATGTGTTAATTAAAATATTGATAATGTAGTGTGTATTTGTATG TATGAGAATTATGAAGTTAATGTTTATTTGTATGTGTATGTTAGGATAATTTAGTGTGGA TTTTTTATATTTGAGTATGATATATAGAGTGTTTTTTGAAGTGTGTGTGTTTTAATATTT ATTGGGATTGATATTAATATATAATTTATGTAATAAATTTGTTATTTTTTATTATATGTG ATGGTATAATGATTATATAATATGTAGTTTGGTATATTGATATATTTTGGTTATGTTNTA GATATGATTGTAGAGATTTATGTGAGTGNTATATGGAAAAAATTTAATTAAATGGAGTTT ATTAGGTATTGGGTATAGGATATAAAATGTAGGGTTATAAGAGTGTAGTATAGTAGTATT GAGATATATATAAATGTTATCATATT |
| GenBank Accession | HE664425 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:18578592 - go to primer design |
| BLAST e Value | 6e-35 |
| Hit Clone Code (BAC ID) | F14I3 |
| Hit Gene Code | At1g50140 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL942268 [GenBank] HE664425 [GenBank] |
Gene hit At3g05670
| Sequence (A. th genome BLAST matches underlined) | >38-K014989-022-264-F05-8409 TTGATCCATGTAGGATTTCCTGAAATGAATCGATTTACAATTGAATATATTCGTGCAATG GTTTACATGACCAGCACCGTGTTCCCAATCTTATAGATCCACCACCGTATACTAACAGAT CATTTGTTAAGAAACCACATTTTCATGGTGCTATATTCTCTATGGGATCCTCCCATTAGT GAGNNCTANCAAACCAGGTAAAATTATGTGGGTTACCTTTTCACATTTTGAGTTATCTTA ATGCATTTTCTATGGGATCCTCC |
| GenBank Accession | AL942267 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:1653006 - go to primer design |
| BLAST e Value | 1e-19 |
| Hit Clone Code (BAC ID) | F18C1 |
| Hit Gene Code | At3g05670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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