SimpleSearch - Line and FST details
Line specific information
| Line ID | 266A04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425444) |
| Segregation Analysis | 50:42:35 |
| Confirmed for Hit | At3g62680 |
| Parent of DUPLO pair | 2329 |
| Parent of pair(s) | none |
Gene hit At4g28710
| Sequence (A. th genome BLAST matches underlined) | >25-K014991-022-266-A04-8409 TTGATCCATTGTAGATTTCCCGCACATGAAGCACTTTACAATTGAATATATCCTCGTACA TAACTGTGAAGGGAGAATCTCCCCATACGGAATCCTCCTGTAGTGTGCTTAGAATTGCGT TTAAGCCGTCATAAATCCCATTCCAGTGGGCTATGGGATCCTCACTATAGTGAGCCGCTA TCTACTGCCATATACTGATCATTAATGGCCTCATTCAAACTGCCTTATGTAGTACTGCTC TGACAGAACGTTAATTATCAAGAATGGGCACATTATCACTAGGCAATATACTAACGGTGT TGCTTCCTTTGCTATGGCATCCCACCTATATCCGAGTGGTTATGCTTTTCATTTCATATA ATAAAATTGCAAGAGTAAATTCTTTTTTTTTTTT |
| GenBank Accession | AL942441 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:14180568 - go to primer design |
| BLAST e Value | 8e-24 |
| Hit Clone Code (BAC ID) | F16A16 |
| Hit Gene Code | At4g28710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Myosin family protein with Dil domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g62680
| Sequence (A. th genome BLAST matches underlined) | >25-K014991-022-266-A04-8409 TTGATCCATTGTAGATTTCCCGCACATGAAGCACTTTACAATTGAATATATCCTCGTACA TAACTGTGAAGGGAGAATCTCCCCATACGGAATCCTCCTGTAGTGTGCTTAGAATTGCGT TTAAGCCGTCATAAATCCCATTCCAGTGGGCTATGGGATCCTCACTATAGTGAGCCGCTA TCTACTGCCATATACTGATCATTAATGGCCTCATTCAAACTGCCTTATGTAGTACTGCTC TGACAGAACGTTAATTATCAAGAATGGGCACATTATCACTAGGCAATATACTAACGGTGT TGCTTCCTTTGCTATGGCATCCCACCTATATCCGAGTGGTTATGCTTTTCATTTCATATA ATAAAATTGCAAGAGTAAATTCTTTTTTTTTTTT |
| GenBank Accession | AL942441 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:23183698 - go to primer design |
| BLAST e Value | 3e-17 |
| Hit Clone Code (BAC ID) | F26K9 |
| Hit Gene Code | At3g62680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | proline-rich protein 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g08555
| Sequence (A. th genome BLAST matches underlined) | >25-K014999-022-266-A04-8409 AAACCCAAAAGTGATTGGTCCTTTACTTAAACCCTGATGGGATCCTGCCCTATAGTAGAG ATCCGTGAGAGAACACTTATGGGTACTCGCTCCCGGTAAGGTTAGACCGGTCTCGGACTC AATATTCATACAGATCTGTGA |
| GenBank Accession | AL942442 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:20620130 - go to primer design |
| BLAST e Value | 1e-06 |
| Hit Clone Code (BAC ID) | T22E16 |
| Hit Gene Code | At3g08555 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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