SimpleSearch - Line and FST details


Line specific information

 
Line ID 268C08
Vector Used pAC161
Line Availability available as T3 set from NASC (N425664)
Segregation Analysis 50:46:35
Confirmed for Hit At5g38250
Parent of DUPLO pair none
Parent of pair(s) 97109, 97111
Note

Gene hit At4g30950

 
Sequence (A. th genome BLAST matches underlined) 
>59-K015068-022-268-C08-8409
TTGATCCATGTAGATTNTCCCGGACATGAAGACCTTTACAATTGAACTTTTGCGGGACTG
AAACTAAGGTTGTTTTCAATTTTTTTAGTCCTATGGGATACTCTCCTATACCGAGGGATG
AGTGGAACGCGGCTCATGCCCAGCTGAATGGAACTGTTCATTGTGACAGCCCTATGGGAT
CCTCCCTATAGTGAGACGAGCTACCCTCTATCCATCCTTGC
GenBank Accession AL942687 [GenBank]
Graphic View Graphic view of gene At4g30950
Predicted Position of Insertion Chr4:15057904 - go to primer design
BLAST e Value 2e-18
Hit Clone Code (BAC ID) F6I18
Hit Gene Code At4g30950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation fatty acid desaturase 6
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 268D08

Gene hit At5g38250

 
Sequence (A. th genome BLAST matches underlined) 
>59-K015061-022-268-C08-8409
CTGATCCATGTAGATTTCCCCGCACATGAAGCCTTTACAATTGAACTTTTGCGGGACTGA
AACTAAGGTTGTTTTCAATTTTTTTAGTTCTATGGGATCCTCCCTAAAGTGAGACGATGG
AAACTCCCCATATACACGGGCTATCCACCACTCTCTAGACTCGGAAGGAAAAAAAGGATG
ACACACAGTCAATGATTGCCCCTAGCTCTTCCTCTTTTTCTTCAGCAGCTATGGGATCCT
CCCTCTAGCGAGGGCACAGGAACCCCCCGCAACCCTTCGCCCCTTACTACCCACTCCTAT
CCCCCGCCATCCCCCCGGCCTCACGATTATTCCACCAGCCCGAAATCG
GenBank Accession AL942686 [GenBank]
Graphic View Graphic view of gene At5g38250
Predicted Position of Insertion Chr5:15281763 - go to primer design
BLAST e Value 4e-13
Hit Clone Code (BAC ID) MXA21
Hit Gene Code At5g38250 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37