SimpleSearch - Line and FST details


Line specific information

 
Line ID 268H04
Vector Used pAC161
Line Availability available as T3 set from NASC (N425720)
Segregation Analysis 50:40:38
Confirmed for Hit At5g54710
Parent of DUPLO pair 12237
Parent of pair(s) none

Gene hit At5g54710

 
Sequence (A. th genome BLAST matches underlined) 
>32-K015061-022-268-H04-8409
TTGATCCATGGTAGATTTCCCGGACATGAAGCCCTGTACAATGGAATAGTATACTGTGAC
AAATAGGGGTTATAAGCATAGACGACCTGGGGGCTCATGCTCTAACTCGTGCATGAAGTG
CTTTGATACAATAGTATGCCGATAGAATTCCTCTCATGCTATGGACATTATAGCCATGCT
TTTGACGTGATCCGCTATGAGATGCAACATTGTTTGAGTCGCTCCTTGTGTGGATATGTG
AAAAGACAAAGGAGCCTTGCATAGAAACTCCGTTAGGATTGGAACTGATCCGGGAATCAC
CGTACGATGCGAAGGGGTCAAACCATCTTTATCCACCTTTTCTGCAATTTCTTGATTAAC
ATCAACATCTAATAGTGTCCTTGCCATCTCAAGGTTTCCTGATTTGCACGCTTTATGCAA
TAGCGTCGACTGCTCTTCATCAGCATCAAGAATTAGGTTCGGGAATTTCTCTATGGGATC
CTC
GenBank Accession AL942753 [GenBank]
Graphic View Graphic view of gene At5g54710
Predicted Position of Insertion Chr5:22229114 - go to primer design
BLAST e Value 3e-106
Hit Clone Code (BAC ID) K5F14
Hit Gene Code At5g54710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ankyrin repeat family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g23230

 
Sequence (A. th genome BLAST matches underlined) 
>32-K015068-022-268-H04-8409
AAATTTGGTATCCATGTAGCATTTCCTCGGACATGAAGCCTGTACCACGGTATGAACAAT
TTGACAGATAAGGTCTAAAGCAAAAACAAACCTGTGGTCACATGCTCTAAGTCGTTCATG
AATCTTTGATCATGTATGTCTATAAATACCTTCGATTCTATCGACATTTTAGCCAAACTT
TTGACGTGATCCACTATGGGATCCTCCCTTTAGTGAGATTTTTTTTGGGGG
GenBank Accession AL942754 [GenBank]
Graphic View Graphic view of gene At2g23230
Predicted Position of Insertion Chr2:9892548 - go to primer design
BLAST e Value 6e-80
Hit Clone Code (BAC ID) T20D16
Hit Gene Code At2g23230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Terpenoid cyclases/Protein prenyltransferases superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37