SimpleSearch - Line and FST details


Line specific information

 
Line ID 271D07
Vector Used pAC161
Line Availability available as T3 set from NASC (N425963)
Segregation Analysis 50:37:35
Confirmed for Hit At4g31520
Parent of DUPLO pair none
Parent of pair(s) 12453
Note

Gene hit At1g28180

 
Sequence (A. th genome BLAST matches underlined) 
>52-K015064-022-271-D07-8409
CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTTGTATT
ATAGTTGGTATTCCTTGTATTTTCCGATGTTTAGGCCAACAACAAAGGTACATCTTCTAT
GGGATCCTCCCTATAGTGAGAGAATCAGACAGAAGGTCCTTACGCTCTTGTTATGGTTCC
TACACGGGAGCTTGCACATCATATAGAAGAAGAGACGGCTAAGTTTTCGCGTTAATTGGG
GTTCAAGGCGGTTTCTATCACTGGTTGGGAGTCAATATAGAAACACGCCTTGAAATGATC
ACAAGGATGTGAGATTGTGATTGCTACCCCTGGGCGATTGCTATGGGATCCTTCCTATAG
TGAGAATAACAA
GenBank Accession AL943070 [GenBank]
Graphic View Graphic view of gene At1g28180
Predicted Position of Insertion Chr1:9844193 - go to primer design
BLAST e Value 2e-95
Hit Clone Code (BAC ID) F3H9
Hit Gene Code At1g28180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DEAD-box ATP-dependent RNA helicase-like protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At4g31520

 
Sequence (A. th genome BLAST matches underlined) 
>52-K015071-022-271-D07-8409
GATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTTGTATTATAGTTG
GTATTCCTTGTATTTTCCGATGTTTAGGCCAACAACAAAGGTACATCTTCTAGCAAGAAG
AAAAAGCAAGCAAAACTGCAACGCGCCATGCGAAGTATTAAACGAAAGCAGCGTGCGTCG
TCTGAGAACACTACTTCAACTTATTCACCTCTTAATCATCTAAATGATGCACAGGTTCAT
TTCCTATGGGATCCTCCCCTGTAGTGAGACTATGGGATCCTCTTTATAGAGAGAATCCGC
CCCAGAAAAAGTTAAAGATTCTGCTATTGCCCTA
GenBank Accession AL943071 [GenBank]
Graphic View Graphic view of gene At4g31520
Predicted Position of Insertion Chr4:15280787 - go to primer design
BLAST e Value 4e-93
Hit Clone Code (BAC ID) F3L17
Hit Gene Code At4g31520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SDA1 family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37