SimpleSearch - Line and FST details
Line specific information
| Line ID | 271D08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425964) |
| Segregation Analysis | 100:83:46 |
| Confirmed for Hit | At3g18830 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3379, 3749, 30497, 78458, 78459 |
| Note |
Gene hit At3g18830
| Sequence (A. th genome BLAST matches underlined) | >60-K015064-022-271-D08-8409 NTGATCCATGTAGATTTCCCGGACATGAAGTCCTGTACAGTTGTGCATAAGACTCTGTAC CTACCACTGCTTGTTATGATCACAATCTAACCTCGGGAGTCTGCACCGTGCATATCGGGG TTACCCTTATGCTATACTCTTGGGATATGTACAGCTGAGACCACTGAAAAGCTATACATA TCCTCAAGCATCCTCCCTTGTGTCTCCGGCAAGAAAGTGTAAAAGAAAACCCAAGCCACA ATCGCAATACCTCCAAACAAGTAAAACGCTCCACCAGTAGTCATCGCTTTCGACATTGGA AGAAACGATATCGAGATCACACCGCTATGGGATCCTC |
| GenBank Accession | CR396432 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6489020 - go to primer design |
| BLAST e Value | 2e-79 |
| Hit Clone Code (BAC ID) | MVE11 |
| Hit Gene Code | At3g18830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | polyol/monosaccharide transporter 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T22P11
| Sequence (A. th genome BLAST matches underlined) | >92-K020162-022-271-D08t-8409 TCATTTNAATAGGAATCTGTATATNATATAATAAAAAAGNNGATTTANNNATTAATAATT TNATAATTNGGNTATGGGATNTTNNNTATAGTGAGGATNNNNNNNNNNNNNNNNNNNNNN NNNNNTTTNTNNNNNNNNNANTNTTGTTTNTTTTTTTATTTANATATAAGTTGGGAATCC TNNTTTATTCTTTTCCNTNTCCTTTTTTCTTTTTCTTTCTCTTTTGCTGGGCCGGGNNAA ACANTTTTTTTTTTTTTTCCCCCCCCCCCCCANACCAANNTNTTTNCTTCAACAAAAAAA AGGGGGGGGNTNTNNNTTTTTTTTTNCTTNTNTCAGTTNTTTTNTTNTNNNCCCCNNNTT TNNTTTTNTTNNNNTNNNNNNNNNNNNNNNTTNNTNTNNNNNTTTTTTNNTTTTCTTTTT TTCTNNTGNCCTNNNNNNTTNTTNNNNNNNCNNNNTCTNNNTNTTNTTTTNTNNNTTTAT TTNNNTTTNNNTNNTTNNNNNTNNNNNNANCNCNNNNNNNCACNNNANTTAANNNGTTTT ANNNNANTAACCGTTTNNTTTTTNNNTNTTCNTTAANNNNNTNNTATTTTTNNTNNTTTN TNANATAATATTNATNNAANNNCCNNCNATTATANTNNNNTTANNNNTATTTTTATTTAC TNTGTTAGTTNNTNTTTTTTTTNCTATTTTTAATNNNNNNNNNTCCCCCANNNNNNTTTT NNTATCCATANTATCCTNTTNTTTNNNTNNTTTCNATTTNTCTCNCCCTTTACAATATAT ATATTANNAANTAATTNATTATTTTTTTATTTTATTACCGTTTTACAANTTTTAAANAAA TCGCACAATTATCACGATCTATTCTCCTAGTGAGTTAAACTTCTGTTAATTTTATTTCAC CTATCTTGCGTGGATTTTATTCGATTATACTTTATTATTCTCTCTTTGTTTTTTAATTTT TTGCATTCTNGCGNAACATACATTTCAATTTATATTCTAATGCGATATTTATTTTCTAGT TTCAATTATGACTTCTTNCTACCATTACTNAATCTGTCTNTCTCTTTACATGTTTTTNTT CTTTTACTTTTNCTTTTTTTTGTGAAGTAAATTCGACATATCTTTATG |
| GenBank Accession | FR806947 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:566584 - go to primer design |
| BLAST e Value | 1e-04 |
| Hit Clone Code (BAC ID) | T22P11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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