SimpleSearch - Line and FST details
Line specific information
| Line ID | 271F06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425986) |
| Segregation Analysis | 50:40:30 |
| Confirmed for Hit | At5g43090 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12062 |
Gene hit At5g43090
| Sequence (A. th genome BLAST matches underlined) | >46-K015064-022-271-F06-8409 AAATCNGATCCATGTAGCATTTCCTCGGACATGAAGCCTTTACAATTGACTACTTACCAC GAAACGATATAATTCTATATAGGTATGTGAGTAACTGATGATAAGATGTAATATGTGAAT GAGATGCTTACCCTACACTGCGACGAAGTAAACATGCGGAAACATGCTATGGGATCCTCC CTATAGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTTTTTTANNANN NNNTTNTTNNNTTATNTTTTTTNTNNNTTNTNNTNNTNTTTTTTTTTTTTTTTTTTTTTT TTCTTTCTNTTTCTTNNTNTTTTTTTTTTTTTTTTTACCCTTTTTTTTTTTTTNNTTTTT TTCTTCCCCCTCTTCTTCTTCCTCCCTTCCCCTAATTNNTCCCCTCCCCCCTTTCCCTCC TCCCTTATCTCCCCAACTCCCACCCCCTCCAAATAACAAACACTCCCACCCCAACCCTAC TCAATACAATCCAACTTCCCCCCCTTACACTCCCGCCCCCTCCTATCCCAATTATCACAA AAACGATTGAAAAC |
| GenBank Accession | AL943100 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17297163 - go to primer design |
| BLAST e Value | 3e-26 |
| Hit Clone Code (BAC ID) | MMG4 |
| Hit Gene Code | At5g43090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | pumilio 13 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g08460
| Sequence (A. th genome BLAST matches underlined) | >46-K015071-022-271-F06-8409 AANTTCCGCAGTCGCGACGCCAGAGACCGAAGATTAGATCATGCCTATGAGATCCTCCCC TATAGTGAGACGAAGTAAACATGCNGGAAACATGCTATGGGATCCTCCCTATAGTGCGAA TCGATACACTATAGAAAACTCCCCATAACGAGATCCTGCGAACCTCAAGATCCATTAACT TCCATGGGCCAAAAAGTGAACACGTCTGTTACTAACATCTGTGCTGAATATAAATTCACT ACAATCGACAAGGGGACCACTATGGGATCCTCCCTATAGAGAGACGTTNTCCTCGTATTC TCCTACTGGACCGACACGCCGCTTTGTATACACCTTCCCCCCCGTTATATTTCTCGCCGA CCCACCACCCCCGCCTGCGTTCGCTTACGCTCCTATGCGCGAACCCCCCCTAATTCGTTC ACCGCCACTCCCTAACCCCCCCGCCGTACGCTGGTTGGGGTACCAACAAATTGCCCCCCG CACACGCTCAAACACATCTCAACCAAAGCCTTAGC |
| GenBank Accession | FR806955 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2674173 - go to primer design |
| BLAST e Value | 3e-29 |
| Hit Clone Code (BAC ID) | T27G7 |
| Hit Gene Code | At1g08460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | histone deacetylase 8 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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