SimpleSearch - Line and FST details


Line specific information

 
Line ID 272A04
Vector Used pAC161
Line Availability available as T3 set from NASC (N426020)
Segregation Analysis 50:46:37
Confirmed for Hit At1g76640
Parent of DUPLO pair none
Parent of pair(s) 9694

Gene hit At1g76640

 
Sequence (A. th genome BLAST matches underlined) 
>25-K015091-022-272-A04-8409
GGACATGAGCACTATGCCGTGAAATACCTCTCTCTTTCTTATATATTATAGACATCTTGG
GTATAATATTTTATTTACTTTTGTAGACATGTAGCAATCTGCGGACAAAACAGGATCATA
TATAAACGCACATGCCTGGTAGAGCTATGGGATCTCCCCTATAGTGAGACTGCAGCCAGA
CTATGGGATCCTCCCTATAATGAGACAATGTTCTTTCGATCAGAATAGAAACCGAGAGAA
GTTATTGAGATGGGCTTCGTCATTGACGCCGCCATGATTCTATGGGATCCTCCCTATAGA
GAGACAGCCACCAATGCTCTGCTCTTCTCCTCTAAAAATTTCATGAAAGATGAAGATAAC
TGACGTTGAGTGTTCTTCATTTTGAGAAAGAAAAGATTGTATTTGTTATAAGTTACAAGT
ATAGTTCTTTCTTTTTTTGATTTAGGATTTGAATGAGAAATGGGATAAAGTGTTTCTCTA
TATATATAGGTGGGTTTCAAGTCCAGAATAGTAATAAGAAAATGGAAATTGGAACGAATC
AGAGGTGTGAAATTC
GenBank Accession AL943142 [GenBank]
Graphic View Graphic view of gene At1g76640
Predicted Position of Insertion Chr1:28765466 - go to primer design
BLAST e Value 1e-93
Hit Clone Code (BAC ID) F28O16
Hit Gene Code At1g76640 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Calcium-binding EF-hand family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g17750

 
Sequence (A. th genome BLAST matches underlined) 
>25-K015096-022-272-A04-8409
CTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAGTACTAAGACCTATGGGATC
CTCCTCTATATGCGAGATTTTTTCTTTGGTTCTTCCTTTATCTAGGTAGAGTATAACATA
CTTGGTAGTTGGTAATGTACCTCCAAAGACTATCTCAATATATAGTTTCTTACTTTAAGG
AAAAATAAAGTTCCATATCTCTTAATGGGTCTTACAATGGTTCACAACCCTATGGGATCC
TCCCTTAAGTGAG
GenBank Accession AL943143 [GenBank]
Graphic View Graphic view of gene At5g17750
Predicted Position of Insertion Chr5:5860303 - go to primer design
BLAST e Value 4e-81
Hit Clone Code (BAC ID) MVA3
Hit Gene Code At5g17750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-loop containing nucleoside triphosphate hydrolases superfamily protein
Insertion Classification 5' region
Confirmation Status unknown


Last Updated on 10.06.2021 13:37