SimpleSearch - Line and FST details
Line specific information
| Line ID | 273E02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N426162) |
| Segregation Analysis | 50:27:20 |
| Confirmed for Hit | At1g76540 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6846, 63053, 94518, 94519 |
Gene hit At1g76540
| Sequence (A. th genome BLAST matches underlined) | >13-K015097-022-273-E02-8409 TTGATCCATGTAGACTTCCCGGACCTTGAAGCACTTTACACTTGACACTACTCCTGACAT GAAGCCCTTTCTCTTACTATATTTATACTTAATATGGTATATTGACTAATTCTGTGCACA CTCGATTCAACACATAACTTATATGACCTGTTATTTGCAACAGCTTGATGATGCTCATAT AGTCGTAGGGATGCTCTTCAGCCATGGACACAGGGATACTTGCACATGATGAATAGAACT GTGGCTCACCCTTGAATCCACACCTTAAACGAAACAGATAGTACATGATATCTCGTAACA GACACTTCATGAATTAAGATGACTCCATGATTTTTGACTGATACCTATAGACTGACTATC TCTTGAGGGATGGAACAACCATGAGACATCACTTACCACAATACTCTGAAGCATCGCTAA CCTATCATATCCTTGTGCAGATCTTGCTTGATCAGCGTCTCAGATGTTGGACAACTGATG TCTTACACTTATCACCCTATATGCTGATTCCTCATCATATGGTATCACCTGAGACAATCG CATCAAATGCATATGACAAACTATGGGATCCTCCCTATAGGTAGTTCTAGGCGCCCCCCA TTACTCTACTGCTGTGGATATG |
| GenBank Accession | FR806992 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:28721711 - go to primer design |
| BLAST e Value | 0.006 |
| Hit Clone Code (BAC ID) | F14G6 |
| Hit Gene Code | At1g76540 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cyclin-dependent kinase B2;1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g76550
| Sequence (A. th genome BLAST matches underlined) | >13-K015097-022-273-E02-8409 TTGATCCATGTAGACTTCCCGGACCTTGAAGCACTTTACACTTGACACTACTCCTGACAT GAAGCCCTTTCTCTTACTATATTTATACTTAATATGGTATATTGACTAATTCTGTGCACA CTCGATTCAACACATAACTTATATGACCTGTTATTTGCAACAGCTTGATGATGCTCATAT AGTCGTAGGGATGCTCTTCAGCCATGGACACAGGGATACTTGCACATGATGAATAGAACT GTGGCTCACCCTTGAATCCACACCTTAAACGAAACAGATAGTACATGATATCTCGTAACA GACACTTCATGAATTAAGATGACTCCATGATTTTTGACTGATACCTATAGACTGACTATC TCTTGAGGGATGGAACAACCATGAGACATCACTTACCACAATACTCTGAAGCATCGCTAA CCTATCATATCCTTGTGCAGATCTTGCTTGATCAGCGTCTCAGATGTTGGACAACTGATG TCTTACACTTATCACCCTATATGCTGATTCCTCATCATATGGTATCACCTGAGACAATCG CATCAAATGCATATGACAAACTATGGGATCCTCCCTATAGGTAGTTCTAGGCGCCCCCCA TTACTCTACTGCTGTGGATATG |
| GenBank Accession | FR806992 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:28724189 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | F14G6 |
| Hit Gene Code | At1g76550 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phosphofructokinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g76590
| Sequence (A. th genome BLAST matches underlined) | >13-K015092-022-273-E02-8409 AGATCTTCCTCTGTTTTCCTCTGTTTTTACTGAACTTTGCTCTGTATAGTTGAAATGACC ACTATTGCCCTTTTGTTTGGTTTACTTTCAGCTTGGAGGAATGAAGCGTGATCCAAGTCT AACCTTCTCTTTGAGAGGGAAGCATGGAAGAGAGTACGAAGGTGAGTGGGAATCTGATGA AGCGACTACACCAACTAAGATACGCAAGACATGTGCTTTCAACCGTCTGATGAGTGGTCT TTCCATCTCCACCGTTAAATGTGATTACTTGTCAGGAGATCAACCGTCTTCGAGCTCCGG TGATGAGAGCGGTTTTAAACTTTCTCCGGGGACACCGCCGATATATAATCACCGGAATTC AAGTAGACGGAAGGGCGTCCCACACCGTGCTCCTTTCTAAAATTAATACTAACGGAAGCT AATTATATAGTGTAGATTATAGAAAATGTTGGTTGGTTATGTTGTAACTAAATGGTTAGT AGTTTTTAACCTTTTGAGCTATGGGATCC |
| GenBank Accession | AL943320 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:28741494 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F14G6 |
| Hit Gene Code | At1g76590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PLATZ transcription factor family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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