SimpleSearch - Line and FST details


Line specific information

 
Line ID 275D04
Vector Used pAC161
Line Availability available as T3 set from NASC (N426344)
Segregation Analysis 50:46:41
Confirmed for Hit At3g21690
Parent of DUPLO pair none
Parent of pair(s) 122, 3628, 3772, 86165, 86180, 86200, 86204, 86206, 86207, 86208, 86210, 86211, 86213

Gene hit At3g51280

 
Sequence (A. th genome BLAST matches underlined) 
>28-K015100-022-275-D04-8409
TGATCCATGTAGATTTCCCGGACTGAAGCACTCACAATTAGATCGATTAACGTATCTGTC
TGCATCGCTTCGAACAAACGTCTGGCCCACTGTAGGCTACCGCCCACACTATAATAAAAC
ATGATCCACATGTTCAAAACTATATAGACTGGTAATCCACACTCCGTTGCTAACTTCTGC
ATTGACAATCTACTTCTCGTGCTTGAGATGGTCTCTCCCTCATGATCACCACCAATACCA
CTCAACATCCCCATCCCTTGGCTCGACGATCTCGTTCTCTTCATCTTCTCGTTGTTACTG
ATGACCAACTTCGAAGAGAAGAACGGAATTGCATCAACCCTTAATGGGTTACTACTAACT
GGATTCACACTCATCTTCACGTTCTCATCACCGTATCCATCACCATTGCTTAAACCAGGC
TTTGGTTTAGCCTTCACAGTCTGCTCACTACAAGGCTGAGGTTGCCATATAGAGGAAGAT
CCAAAGATTGCATCAAAGAGCCTTCTTTGTTCAACCTTATCATCTCCTCCTCTTCTCATC
ATCTCAGATCCAAGATCATTCAGCATCTGTTGCGCTCTCTCGTAAGCTTTTAGATGTGAA
TCCACGCCACTATGGGATC
GenBank Accession AL943569 [GenBank]
Graphic View Graphic view of gene At3g51280
Predicted Position of Insertion Chr3:19038752 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F24M12
Hit Gene Code At3g51280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Tetratricopeptide repeat (TPR)-like superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g21690

 
Sequence (A. th genome BLAST matches underlined) 
>28-K015095-022-275-D04-8409
CTGATCCATTGTAGATTTCCCGGACCATGAAGCCTTTACAATTGAGTGATTCCATTATTT
GTCGTTAACCTTCGCCCAAACGTTTGCCAACCGCATCCAACCGCCACACCTATAATAAAA
TTTTCCCAATTGTTCAAAAAAAAAAAAAAATTTTCCTTTTTTCGGGTGGGAAAAATGGGG
GGGTACCAACAAAAGGGGTTACCCAAAAGGGCCGGGGGGATTCCCTTAAGGGCCAGGGTT
CCCGGAAAAACCGGCCCAAAAATAAAAACCGGGGCCAAAAATTTTTTTCCCCTGGGGGAA
GGCAAACTTAAAACCTCCGGGCCCCCCTAAAAAACCAGGGGTTGGGGAACCCCCTTTAAG
GGGGGGCCCC
GenBank Accession AL943568 [GenBank]
Graphic View Graphic view of gene At3g21690
Predicted Position of Insertion Chr3:7641457 - go to primer design
BLAST e Value 3e-29
Hit Clone Code (BAC ID) MIL23
Hit Gene Code At3g21690 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37