SimpleSearch - Line and FST details


Line specific information

 
Line ID 275E02
Vector Used pAC161
Line Availability available as T3 set from NASC (N426354)
Segregation Analysis 50:47:34
Confirmed for Hit At3g56770
Parent of DUPLO pair 12768
Parent of pair(s) none

Gene hit At5g24290

 
Sequence (A. th genome BLAST matches underlined) 
>13-K015095-022-275-E02-8409
CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATACATGCCGA
ATTGAATTTACTCTCCCACCGGTCGTAATCTAATTAACCATATTGTCGATTGCAGCTACC
TACTAAAAAGCTATGGGATCCTCTCTTTAGTGAGATTTATAAATCTAACAGACAGTGCAT
ATATCTAAAAATATTTGTACGAGGAATGGTTAGGGATACGATCTAAATCCCGGATACTTG
TGTAACTAGCGGTCACGTCATACATTTTTTTGGGCCTAGTTCCTACGGGAATTGACGCTT
GTTCTTTTTTCTAACCCGGACTCTATATCTACACTCTCATATGCGTTATCTTGGGTTTTC
TGGCTCGCGGAATTGGGCTAGACTACAACAAGGCCTATGTGCAAAAACCACCACGCTCAT
GTGGCTCCGCTGAGGACTGTCTCAAATTTGCGGCTGATAACCCGTGGCATGCGTTGTTGC
TTCTCGCGGAATCGCATACTTCGCGGGTGATTTTATGGGAGAGTATATCCATAATCTCAG
TGTGGTTGGTTCAAACCGAATCAGACTATCCTCTCCATGATACGGAATTAAACCCAGAGA
GTGCCGAGATGCTTCCCATACATATACAGTGGGACTAAGAACCGGTCTGACCAACGTTGT
ATAGTGTCTGTACTAATTACTTACTAAATCTCTGTATCTTT
GenBank Accession FR807027 [GenBank]
Graphic View Graphic view of gene At5g24290
Predicted Position of Insertion Chr5:8263834 - go to primer design
BLAST e Value 4e-38
Hit Clone Code (BAC ID) MOP9
Hit Gene Code At5g24290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Vacuolar iron transporter (VIT) family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g56770

 
Sequence (A. th genome BLAST matches underlined) 
>13-K015100-022-275-E02-8409
CTTTCCCGGACCTGAAGCACTTTACAATTGACTACTACTCCTGAAGACTATGTACCTTTA
GAAGTTAATTTCATATCTTAAATAACCCAAAAGAATTAATAGTTTCATCATGCTTAATCT
TCCATTTTTATCTTCTATGCTTTTTATAATTTTCCGGTTCAAGTCTCTATCTAAGTTTCA
TTATAAGTTTAGAGTAGAGTAGTGAGATAGTAAAGTAAAAGATTTGTGTACCTTGGAGTT
ACAAGAGAGTAACTTGCGGAGCTTGTTGAGATGGGAATTGATTCTTGCTCTTCTCTTTCG
CTCAGCCTCTTTATGGTTCCTCAGAGAAGCAAGAGCTTTGTCTTCATAAACCGTGGCAAA
AGGGTCAGACGACGACGTCACGGTGGTGGAAGTAGACGAGGCACATAATCCTCCGGTGAG
GAAGGCATAAAATATTTGATCTGAAACCTCTGGCTGCATTTTTTTGTTGCTGTTGTTTGC
TTCTCCGCCGCCTCCCTTTTTGTTGGGTTTGGAGCTTTCTTTCGGTGGGTTCTGTCCTAC
CNGCATATGACTATACTATAATTTATACGAAAATAAGCTTAGAGTGAGAGGAAATGTATG
TACATACATATATTTATTTG
GenBank Accession AL943579 [GenBank]
Graphic View Graphic view of gene At3g56770
Predicted Position of Insertion Chr3:21030200 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T8M16
Hit Gene Code At3g56770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37