SimpleSearch - Line and FST details


Line specific information

 
Line ID 278C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N426617)
Segregation Analysis 50:48:31
Confirmed for Hit At1g48430
Parent of DUPLO pair 365
Parent of pair(s) none

Gene hit MJB20

 
Sequence (A. th genome BLAST matches underlined) 
>03-K015156-022-278-C01-8409
NTTCTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATGTATCCTGAG
AGAACAGCAATGAGCAAAAAAAACCTCATTACTCTTTCTTTTTCACCGGTAAGACACGAC
TTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTACCAGAGCGAGGTATGTAGGCTGT
GCTACCGAGTTCTTGAAGAGGAGGCCTAACTACGGTTGCACTATGGGATCCTCGATTNAG
AGAGAAAAATTTGTTGTATAAACTGCATATTGAGTTACATTTACAACAACAGTTTTTTTT
GGAGGAGTATCGTGAATAAGAGTTCAAGTCCACTCGATCCTCACTTTAGAAGAAATTCTA
AAATTCTTATATTTACTATTATTACTCTTCCTATGGGATCCTCCC
GenBank Accession AL943944 [GenBank]
Graphic View Graphic view of sequence AL943944 of line 278C01
Predicted Position of Insertion Chr2:7622318 - go to primer design
BLAST e Value 2e-64
Hit Clone Code (BAC ID) MJB20
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g48430

 
Sequence (A. th genome BLAST matches underlined) 
>03-K015122-022-278-C01-8409
CTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACATCTGAATATACCAGCCTCCCC
ATGCTGAGAGAAAAGTCCAAAAACAGCGAGCAAAATAAGGCCATAATATTAACAAGAATA
ATGCTCTGACTTTCCTATGTCAGTATAAGAAAATACGAGCAGAAACGACATACAACTCCA
AGCCCAAGGTACATTTTCTCTGGACCCAAACGATCTGATGTAACCTGTCCTGGAAGCGCA
CAGACAGATAGTGCAACACCCATGGTTCCAACCATTTCAGATGCATGTTTTGCTTCTGCT
GCAACTTCTGCTATGGGATCCTCCCATTAAGTG
GenBank Accession AL943943 [GenBank]
Graphic View Graphic view of gene At1g48430
Predicted Position of Insertion Chr1:17905135 - go to primer design
BLAST e Value 9e-110
Hit Clone Code (BAC ID) T1N15
Hit Gene Code At1g48430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Dihydroxyacetone kinase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37