SimpleSearch - Line and FST details


Line specific information

 
Line ID 280G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N426861)
Segregation Analysis 50:48:42
Confirmed for Hit At2g18196
Parent of DUPLO pair none
Parent of pair(s) 12697

Gene hit At2g18196

 
Sequence (A. th genome BLAST matches underlined) 
>39-K015200-022-280-G05-8409
CTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACANTTGAATATATTCAATATGA
CGTTAAAAACAATTAGTATTAATATAGCCGTTGGTAATATGACTGCTTCAAAAACAATTA
GTATTAATATGTGATATATGTCCATAAAGAAAAAGGTAATTAATTATGAAGAATAATTAT
TTAAATGACCAACTCTCTGCTGAATCAGCCAAAGGATATTATAATCACATATAGTAACAT
CCACTATGGGATCCTCCCTATAGGTGA
GenBank Accession AL944261 [GenBank]
Graphic View Graphic view of gene At2g18196
Predicted Position of Insertion Chr2:7921442 - go to primer design
BLAST e Value 9e-76
Hit Clone Code (BAC ID) F8D23
Hit Gene Code At2g18196 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Heavy metal transport/detoxification superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MUL3

 
Sequence (A. th genome BLAST matches underlined) 
>39-K015176-022-280-G05-8409
AAGTGACAAAAGTCCTCTTCCTCGTTGACCTCTTAATTCTATTGGGAGTTTGAACGAACA
CGTGCCCTATCAAGCTGACATCAACAAATTTACCAAAATAACACAAAGACGCTATCACAT
TCACCAAAGCCTACTCTTAATGAACATATTCTCTCTCTCTCTCATATTTATATTCTTTCT
CTCCTTGTCTTGAAGATGGGTCGCCGTTTGAAGCACCCAACATGGATTCTCTTTGCTATG
GGATCCTCC
GenBank Accession AL944260 [GenBank]
Graphic View Graphic view of sequence AL944260 of line 280G05
Predicted Position of Insertion Chr5:23131689 - go to primer design
BLAST e Value 2e-30
Hit Clone Code (BAC ID) MUL3
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37