SimpleSearch - Line and FST details


Line specific information

 
Line ID 282A07
Vector Used pAC161
Line Availability available as T3 set from NASC (N426983)
Segregation Analysis 50:41:41
Confirmed for Hit At5g01530
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g01530

 
Sequence (A. th genome BLAST matches underlined) 
>49-K015202-022-282-A07-8409
AATCTGTGCATACCGAACACATGACTGTACGGTTGATAACGGTAAATGATCTGACGTTGG
GATCTTCCGTACGGGGTGCGATCACGTCTCCGGCCAAGTTCTTAGCCAGATTCTGGCCTA
TGGGATCCTCCCTATAGGGA
GenBank Accession AL944430 [GenBank]
Graphic View Graphic view of gene At5g01530
Predicted Position of Insertion Chr5:209500 - go to primer design
BLAST e Value 1e-16
Hit Clone Code (BAC ID) F7A7
Hit Gene Code At5g01530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation light harvesting complex photosystem II
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g42445

 
Sequence (A. th genome BLAST matches underlined) 
>49-K015177-022-282-A07-8409
AATCAATGGATATTGAGGTCAATACTGGTGCGCTATATAATGGCATCTTCATCTCTCAGC
TTTCGTGTTCTATACCTACTCCAAATCTCGTTTTTGTTCAATTCTTAATTTGAGTCTGGG
CTTTTTTTTTTTAGGGTGGAAGAGATTGATGAAATCAAATACATCGATCGCTATGGGATC
CTCCCTATAGTGAGANNNNNNNNNANANNNNANNNANNNCCANNNNNNNCAAACGAAACA
GCCGAGAAAACCGCCCCCGGCCCAAGGGGCACCGAACGGGGCGAGGGGGCGACGCGCACG
GCCCCGCGGCCGGGGGCCCGGAACGGCCAGGGACCCAACACGGCGAAAACGACGCCGCGG
AGACGGGGCCCGAGGGGGACGGGAAGGAAAAGGGGCGAGCGCACACCCAACGCGGGGGCC
CCCCGCGCACGGACGGAACAAACGGCGCCCGCGCGGGCCACCCCCCCCGCAGCGGGGGGA
AAAGGGGGGGGCAGCACGCGCAGCGAGCGGCACCGGCACGCACGGAAAAAGGCCGGCCCG
AGACGGGGAGCAGGAGAAGGCACGCAACAGGGCCCCGCGCCGCGGACGCGGGGACGAAAG
ACAACGCGGACGAGGGGCGCCGGGGCGAAAACACCCCCTCCCCGCCAACCCAGCCAGGCC
GGGGATGACCCGGCGGGAGGAAAATAACAACGGAAAAGGCGCACCGACCAGCAACGGGGA
GGGGGGACACCGCGGCCGCGGGGGGACAACCGTCCCGCGGGGATGGCAAACCAAAAAACG
GCACCGAAAAGCCGGCGGTGGGAGGGGCGCGCAGGGGGCGGAGCACACACACAACAACAA
C
GenBank Accession AL944429 [GenBank]
Graphic View Graphic view of gene At5g42445
Predicted Position of Insertion Chr5:16975931 - go to primer design
BLAST e Value 5e-31
Hit Clone Code (BAC ID) MDH9
Hit Gene Code At5g42445 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification 5' region
Confirmation Status unknown


Last Updated on 10.06.2021 13:37