SimpleSearch - Line and FST details


Line specific information

 
Line ID 283G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N427151)
Segregation Analysis N/A (line seemingly not resistant, T2 plants grown without drug)
Confirmed for Hit At5g27260
Parent of DUPLO pair 12563
Parent of pair(s) none

Gene hit F6N18

 
Sequence (A. th genome BLAST matches underlined) 
>55-K015203-022-283-G07-8409
NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATAATTGAAATTCAT
CACTTGTGGATACTAATGTCATTTCTGTAAGGGATAAAAAAAGCGATAGCTAAGTGATTT
GATATGCCTTTAAAAATCTTTACATCATTTATTTGAAGTAAAAGAACATTAGTGATTAAT
ATACATTATGTCAATTTTATGGTTTTTGTTTGATATAATTTATTTAGTCCGTGTAAGTTG
TAAATTATGACTACTTAATATATTTTTTTCTGGTAACAATTTTGAATCTTAGGCCAAAAC
CCAAATTAATCCTCATGGCCCATAGATTCCGTGTATTATTTTTTTGCCGTTAAAGATGTT
TATGGGTGGTCAACGTACGAAGTAAAAAAAAAAAAAAAACCTTCCTTTGGAAAAAAACAT
CCTTTTCCCTTGGGGGGTTGTTTTACGGGGATTCCCATAAAAAAAAAATCACCCTTTTAA
AAGGTAAACCCTTTGG
GenBank Accession AL944656 [GenBank]
Graphic View Graphic view of sequence AL944656 of line 283G07
Predicted Position of Insertion Chr1:11862076 - go to primer design
BLAST e Value 1e-148
Hit Clone Code (BAC ID) F6N18
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g27260

 
Sequence (A. th genome BLAST matches underlined) 
>55-K015178-022-283-G07-8409
TGATCCATGTAGATTTCCCGGAATGAAGCACTTACAGAAGAATATATACTGTACATTCCA
CATGGTAAAAAACTCTCAGCATCATCTTAGTGGCTACCTTTGCCACTGTGCTCATCTGCT
CTGTTGAGGCTGCAACCATGGCAAATCCTCCTGTGGCTAGCGGCTCTCACTGCAACTACA
GACGTGCCGCTAAGGGATCCTCCCTTAAGTGAGAAAACAAGGAACGTAGTGAGACGGAAA
AAAGACGACAACAAATAAAAAGTGAATGGAAACAACACTGACAACAAAGGATTCAGCCAA
TAAGAACATAAGAGACAAGAGAGAACAAGTGAAACTTTTTCGTCGCAAAAGAAGGAGCTG
GGAGGCTAACAGAATGAGAAGAGAGATGTACGTGACATTTATAGAGATAGTGCGATCGTA
AAGATATACGTTAATATAACAAAGAGATTGCGATATTATTATGATGATCATGGCAATATA
TATTCTAAGTAAGATGATCCTATTCTTTAGTAG
GenBank Accession AL944655 [GenBank]
Graphic View Graphic view of gene At5g27260
Predicted Position of Insertion Chr5:9604005 - go to primer design
BLAST e Value 1e-65
Hit Clone Code (BAC ID) T21B4
Hit Gene Code At5g27260 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Myb/SANT-like DNA-binding domain protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37