SimpleSearch - Line and FST details


Line specific information

 
Line ID 285B07
Vector Used pAC161
Line Availability available as T3 set from NASC (N427283)
Segregation Analysis 50:40:37
Confirmed for Hit At1g10060
Parent of DUPLO pair none
Parent of pair(s) 4933, 4953, 10155, 93991, 93992

Gene hit At3g28680

 
Sequence (A. th genome BLAST matches underlined) 
>50-K015290-022-285-B07-8409
AATTGACGCCGAGTTGACTGACTGCCTATCGCATCTACTCTATAGTGAGANNNAANNANA
CNTNNNCTTCTTTTTTTTTTTACAATAGGAAAGTGAACGCCCCTTGTATATAAAACGANC
GCTAATATACTCAACATTTCTGATATTTCCAACGCAATGTAATTTATTGATAATATTGTA
AACGCTCCGCGTACATGCAGAAATCATGTGATGTTTATTCGACATTTTAAAAATATGTCT
GATACTATTAACTTTGCAAAGTAATTTATCGTTACAAATCGCAGTTTACGATATCAAAGA
TTACCGTCCATAGTATTTTGACGTCTCCACTATATTTGCTCTCGCACGGTATCCCCGACC
TCCCATAATACCCACCCCCCCATACCCAGACACCCCCCATCCTTACTCCCCATCTCCCCA
TGGCACTCCTTTCTACCCCCGCGCGCGATCCCACCCCCCGCTCCCATGTGTCCGGCCCAC
CCCTGCGCGTTCCGGACACGCCAACCCGTGCACATGTTATTTCCCCCGCCACCCCCCGCT
CCCATTCGTTATCCGCCCGCCCCAACGCGTGCCCCCCCCATATTCCATCTTACCCCCCCG
CATTAACATTTATATCCAA
GenBank Accession FR807206 [GenBank]
Graphic View Graphic view of gene At3g28680
Predicted Position of Insertion Chr3:10749903 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) MZN14
Hit Gene Code At3g28680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Serine carboxypeptidase S28 family protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At1g10060

 
Sequence (A. th genome BLAST matches underlined) 
>50-K015277-022-285-B07-8409
CTGATCCATGTAGATTNTCCCGTACATGAAGCACTTTACAATTGAATCTAAAAAAATAGT
GCTGTACATTTCCAACCATTAAAAGTTTTAAACCAAAAAAACAAAAGTTTAAAAGTTAGT
GTTTTGTTAGGAATATGAATAGTCCTTGTCTTGGATTCTATGGGATCCTCCCTAGTAGTG
AGACGACACCCC
GenBank Accession AL944825 [GenBank]
Graphic View Graphic view of gene At1g10060
Predicted Position of Insertion Chr1:3285007 - go to primer design
BLAST e Value 6e-37
Hit Clone Code (BAC ID) T27I1
Hit Gene Code At1g10060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation branched-chain amino acid transaminase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37