SimpleSearch - Line and FST details
Line specific information
| Line ID | 285B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N427285) |
| Segregation Analysis | 50:48:37 |
| Confirmed for Hit | At5g11940 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6293, 6322, 6358, 6360, 84040, 84049, 84066, 84075, 84084, 84096, 84104, 84108, 84112, 84113, 84115 |
| Note |
Gene hit At5g11940
| Sequence (A. th genome BLAST matches underlined) | >66-K015277-022-285-B09-8409 TGATCCATGTAGATTTCCCGGACATGAAGCACTTTTCTTTGAGACTGGCGGAAACCAGAG AACTATAAGAGTGGTTTGCTTCATCGCACTTGAGGCCTTACCACGGCCTCGTCCTCTGGT TGGGGCTTTAGCTCTACCACGAGTTGTATTAGCAGTGGATGAACCTCTTCGTCCTCTATG GGATCCTCCCTATAGTGAGAAGAAACCATTCCGATAACTATGAACTATGGACTCACTAG |
| GenBank Accession | AL944828 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3849842 - go to primer design |
| BLAST e Value | 4e-13 |
| Hit Clone Code (BAC ID) | F14F18 |
| Hit Gene Code | At5g11940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Subtilase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g27010
| Sequence (A. th genome BLAST matches underlined) | >66-K015290-022-285-B09-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTGTTTTTAAGACTGACGTGTTTCTC TTGATAGCTATAGAAAGCGGCATTCTTGATGGAACTTGATGCCTATCTCACATGTCGTCC TTCTTATGTGTGGTGGCTTCATCTGTACCGCTAATTGTATTATCTAAGTATGAACCTCTT AAGAACGATAGGGTATACTGAATCATGTGTGTGTACACTCAAAACAGCAAATTTGAGATT TTTACCTTAATGGCACAATAAGAGCGGCCACAACAGAGAAAGCTTTCTCTCACAATATAC AAAACAACAAATATTTGTCTCCTTCCTTTTTAAACTCTTTACAAAACTGGTGTGTTCATG TGCCTAAACTCAGTCTGCGTTTTCCATCTCTCGTTGGTCGCTGCGGCTGTGAATTTACTG TGTTAGGAGGTCTCTTGCTTGGTGCTGGGATCAGCGATGGAATTAAACTTCTGCCACAAG AAATAGACAAAAGTTCCCGATTATATCAGTACATTAGCTGCAAAGACTTGTAAAAAAGTA TATATTTGTTACCTATGGGATCCTCCC |
| GenBank Accession | AL944829 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:9503248 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F2P16 |
| Hit Gene Code | At5g27010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | 3' region |
| Confirmation Status | unknown |
Gene hit At5g54260
| Sequence (A. th genome BLAST matches underlined) | >66-K015277-022-285-B09-8409 TGATCCATGTAGATTTCCCGGACATGAAGCACTTTTCTTTGAGACTGGCGGAAACCAGAG AACTATAAGAGTGGTTTGCTTCATCGCACTTGAGGCCTTACCACGGCCTCGTCCTCTGGT TGGGGCTTTAGCTCTACCACGAGTTGTATTAGCAGTGGATGAACCTCTTCGTCCTCTATG GGATCCTCCCTATAGTGAGAAGAAACCATTCCGATAACTATGAACTATGGACTCACTAG |
| GenBank Accession | AL944828 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:22037004 - go to primer design |
| BLAST e Value | 3e-66 |
| Hit Clone Code (BAC ID) | MDK4 |
| Hit Gene Code | At5g54260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA repair and meiosis protein (Mre11) |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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