SimpleSearch - Line and FST details


Line specific information

 
Line ID 287G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N427535)
Segregation Analysis 49:45:41
Confirmed for Hit At1g21400
Parent of DUPLO pair 12582
Parent of pair(s) none

Gene hit At1g21400

 
Sequence (A. th genome BLAST matches underlined) 
>55-K015292-022-287-G07-8409
CTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAAGTA
CTATGCACTTTTGCATATTGTTGTACTATGCGAGCATCCCATACCGGATCAAAACCAACA
CACCATAGTAAATGTGAATAATTCTAACTTTCTAAGACTGAATAATCTTCAATCTTTAAT
ATCTTTTCTACGTTCGAGTTTTTGAGACTCATTGCAAGAATTTTTGATCCTATGGGATCC
TCCCTTAGGTGAGANGCCNGAANNNANCAGNCNNGNGTGNTANCACGAANNTAAGGAGAA
AAGGACTCGAACNGCATAACAAGAAGCAGCCCCATCTAAAGATTCATCCTCAGAATAAAG
TCATTTTTTTTAAGGGTAATGAACTATTTTGA
GenBank Accession AL945214 [GenBank]
Graphic View Graphic view of gene At1g21400
Predicted Position of Insertion Chr1:7494160 - go to primer design
BLAST e Value 9e-73
Hit Clone Code (BAC ID) F24J8
Hit Gene Code At1g21400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g48835

 
Sequence (A. th genome BLAST matches underlined) 
>55-K015278-022-287-G07-8409
NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATGCCTGCTGA
CGAAGCACAAGAAGGTCTGATGAGTTTATAGGAAGTGATGAAAAGTATTTTACTAGGCCA
ACCTGCCAAGAAAGAGGGTATAATGCTAACTTTGGGAGACTGACTATTGGGGCACTCCTT
AGTAGCTGTTCTCTGTGCGAGATTTTGAGACTGCATTGCGAGATTGCTCAGAACCTACCA
GCTTTTCTGTTGAGGCAACTGCCTGATTTCTCAAGATACGCGTGGACGCGCGACTCTACA
AGAGAAAGGGACTTGCATTGCCTATCTCGAAGGAGCGCTTGTCTATAGATATATCCTCAT
AATACGGTCATTTTGTGTAAGGGTGAGGAAATATTTTGAAGATATTAAGACCAAGTACCT
CAACGCGGCTATGGGATCCTCC
GenBank Accession AL945213 [GenBank]
Graphic View Graphic view of gene At3g48835
Predicted Position of Insertion Chr3:18110118 - go to primer design
BLAST e Value 3e-11
Hit Clone Code (BAC ID) T21J18
Hit Gene Code At3g48835 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation polynucleotide adenylyltransferase domain/RNA recognition motif protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37