SimpleSearch - Line and FST details


Line specific information

 
Line ID 288B07
Vector Used pAC161
Line Availability available as T3 set from NASC (N427571)
Segregation Analysis 50:50:40
Confirmed for Hit At3g48710
Parent of DUPLO pair none
Parent of pair(s) 12439

Gene hit At5g19100

 
Sequence (A. th genome BLAST matches underlined) 
>50-K015351-022-288-B07-8409
TGATCCATGTAGAATTTCCCGGACATGAAGCACTTACATATTTTTGAATTGGGGATACTC
ATTACTCATTAGCCATGTGATGGGGATCTGAAAATCCTCGATATGCGTATTCGTCACAAT
TTGTTTAAATGGATTATAATATTTCATATACACTTAAATCCCACGTGGGCTAAAGCATTG
CCGACACTATGGGATCCTCCCTGTAGTGAGACCTACATGGNGCTATNTTTCTCTACTTCA
TCCTTCTTATTCGTCTCTGTGTCCTTCTCGGTAACAGCAACAGTATCTGCTATCAGATCC
T
GenBank Accession AL945264 [GenBank]
Graphic View Graphic view of gene At5g19100
Predicted Position of Insertion Chr5:6409740 - go to primer design
BLAST e Value 2e-67
Hit Clone Code (BAC ID) T16G12
Hit Gene Code At5g19100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Eukaryotic aspartyl protease family protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At3g48710

 
Sequence (A. th genome BLAST matches underlined) 
>50-K015346-022-288-B07-8409
CTGATCCATGTAGAATTTCCCGGTACATGAAGTCCTCTACAATTGAATATATCCTGAATA
CCCCACATCTGAAGACAGCGGAAAAAAAATATTTCCCTTACTTATATAGACGAGTAAGAA
AATCTCTTACTACTCGTATACATTTACCCTTTGGGATCCTCCCTATNAGCTGAGTGGAGT
CACCGGCGATTTAACTTTTTCTCCATCAATTTCTTCTCCTTTCTCCTCCATGGCCTCATC
TTTCTCTACTTCATCCTTCTTCTTCGTCTCTGTGTCCTTCTCGGTAACAGCAACAGTATC
TGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL945263 [GenBank]
Graphic View Graphic view of gene At3g48710
Predicted Position of Insertion Chr3:18041307 - go to primer design
BLAST e Value 6e-12
Hit Clone Code (BAC ID) T8P19
Hit Gene Code At3g48710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DEK domain-containing chromatin associated protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37