SimpleSearch - Line and FST details
Line specific information
| Line ID | 289E11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N427707) |
| Segregation Analysis | 50:36:27 |
| Confirmed for Hit | At5g25430 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4581, 4610, 4671, 8456, 92862, 92863 |
Gene hit At5g25430
| Sequence (A. th genome BLAST matches underlined) | >85-K015347-022-289-E11-8409 TGATCCATGTAGATTTCCCGGACTGAAGCACTTACAATTGAAATATCCTGAGGTGTACAC GTGGGGATGTCTGATTCAGGGGCTTTTTGTGTACACGTGTGTGATACCTTTAAACCATTT TGTGAGCAGAAACTAGGGGATCCTCCCTATAGCGAGAGATCCAGTTATATAGTAACCCAT CTCACAGGGTATGCAACAACCGTGATGCCAGACGGTCCTGACCGCTGGCCGATACAGTCT GAAAGGGGCTAACTACCTGTAGATACCACCTGGTCCACCTGACTAATGGGATACACACAA GAGTGAGCAGATCAGAACCGACTGGGACTCGATCAATGGGTCGTGGATACGTTCAGTAGA CTA |
| GenBank Accession | AL945461 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8853939 - go to primer design |
| BLAST e Value | 2e-30 |
| Hit Clone Code (BAC ID) | F18G18 |
| Hit Gene Code | At5g25430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HCO3- transporter family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g24800
| Sequence (A. th genome BLAST matches underlined) | >85-K015352-022-289-E11-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACANTTGAAATTATCCGGTAGAG TAATCGGATGGAGGTTTGAGAGTGGAGCTGTTTAGTATCCTATAGTGTGAATCCTGAATT TCTCCTATGCGAATCTCAGCTCAGTTGATCGGAATTTTACGGTTCGAGTATTCAGTCCGA TTTTTTGCCCAGTTCTATGGGATTTCAAATTTTCAATATTATTTATTGATTCTTACGTAT TTAAATTTTGTTGGAACTTTTTATTTTTCCGTTGAAATGCTAATGGTTAGTTGGTGTTTA ATTGAAAATTGCTAATCACAAAAAAAAAAAAAACCTACCCTTTTTTTACCGGGGAAAGTT TTTACCCGGAAAAGAAAAACCCCCAGCTTTTGGGAGGTTTTCCCCCCAAAGCTTTAAACC CCCACCCCAAGGGGGAAATTTCCCTTAAAAAACAAAGGGCCCGGTTTAAAAAAAGGGGCA AAAATTTTTTAACGGCCCTTTCCCCTTAACC |
| GenBank Accession | AL945462 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:9055246 - go to primer design |
| BLAST e Value | 7e-21 |
| Hit Clone Code (BAC ID) | K7P8 |
| Hit Gene Code | At3g24800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | proteolysis 1 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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