SimpleSearch - Line and FST details


Line specific information

 
Line ID 289H07
Vector Used pAC161
Line Availability available as T3 set from NASC (N427739)
Segregation Analysis 50:49:47
Confirmed for Hit At3g06470
Parent of DUPLO pair none
Parent of pair(s) 9540

Gene hit At1g19080

 
Sequence (A. th genome BLAST matches underlined) 
>56-K015352-022-289-H07-8409
CTGATCCATGGTAGATTTCCCGGACATGAANGCCCTTAATATTTATAGTATTTTATGATT
CTCTGTCTTTCTTTCTTTCTTTTTGTTTAAGCTTTTTTTTTTGGCACCACCTTTGGTTAA
ACCTAAGAAGGGAGGTAAAAGGATTTCCAAAATACCGTTTAACCGGGTAGCCCCTTTCAA
GGGGATTTTTTGGATCCAAACCCAAAAAAAAAACCTAGGCTTTTTTTCAAAGGGGAGGGA
GAATTTTTTCCCAATTTAAAGGCGGGAAACCCTGGGTAACCCAATATTTTAATACCTACC
TGGGGGTTCAACCAAACTTTCAAAGGTAACCTGGTTTGGAAACCAAACCTTTTAAAACAA
ATCTAACTGGGGCCAAAACCAAAACCCCCACCCAAAATTTTTTCCGGGGATTGGCGGATG
GATAAGAATAAAACCCAAAGGATTGGAATAATGGCCTGGGGGGGGTCCCCACTAAAATTG
AAACCGGGGGGGGTTGGCAAAATTTTTAAAAAGGTTT
GenBank Accession AL945509 [GenBank]
Graphic View Graphic view of gene At1g19080
Predicted Position of Insertion Chr1:6585557 - go to primer design
BLAST e Value 1e-05
Hit Clone Code (BAC ID) F14D16
Hit Gene Code At1g19080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GINS complex protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g06470

 
Sequence (A. th genome BLAST matches underlined) 
>56-K015347-022-289-H07-8409
NTGATCCATGTAGCATTTCCCGGACATGAAGCACTTTACAATTGAATATACGGTTACTAC
TTCCTCTGCGCCGTTGGATCGAGGCCCAAGTGGAAGAGATTGGTGACGGATTGTCAGATT
GTTCAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTTATTCGGG
TCGGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTG
GCTCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGAGGATGGC
AAAAAAAGCGATTAGATTGGTTTCTTGGACAATAAGTAAAACCTCTCATTGTGTCTTGAA
TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT
TTTTGTCTGTGTTGTACTTGCAAATGTTGAGATACTTTTGTACTTGTATGAATATAAGAT
GACAGAAAATATCAAAATATCACAAAAGTCATGACATGGACTCATCATCTCTAATTCTTT
GACTGAAAAGTACGTTCAATCTAAAGAATTCATGCAATGATGTAAGCAAGAATTGAATTT
AAACATCGTTCACCATTCCAAGAACATTGTAAATTTATCATCTCTAAATGCTGTATCTGT
CTATCTATGGGATCTC
GenBank Accession AL945508 [GenBank]
Graphic View Graphic view of gene At3g06470
Predicted Position of Insertion Chr3:1984776 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F24P17
Hit Gene Code At3g06470 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GNS1/SUR4 membrane protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37