SimpleSearch - Line and FST details
Line specific information
| Line ID | 290D04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N427784) |
| Segregation Analysis | 50:50:40 |
| Confirmed for Hit | At1g14480 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 77082, 77091 |
Gene hit At1g14480
| Sequence (A. th genome BLAST matches underlined) | >28-K015353-022-290-D04-8409 TTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATTGATGATTACA TTCGTTAATATTGATGATTACATTCGTTGATATTGATGATTACATTGTTTTTGAATATTT TTAGCCATAATCACCATTATATAGTTGTAACACGAAACGTCGTTAATATTGATGATTTAA CATTCGTTGATATCTTAAGGACCCAGGGAGAGAACGCAGGTGGTGGGAACCTATGGGATC CTCCCATTTNAGTGAG |
| GenBank Accession | AL945572 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4957102 - go to primer design |
| BLAST e Value | 8e-33 |
| Hit Clone Code (BAC ID) | F14L17 |
| Hit Gene Code | At1g14480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ankyrin repeat family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g16440
| Sequence (A. th genome BLAST matches underlined) | >28-K015348-022-290-D04-8409 NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATTGATGATTACA TTCGTTAATATTGATGATTACATTCGTTGATATTGATGATTACATTGTTTTTGAATATTT TTAGCCATAATCACCATTATATAGTTGTAACACGAAACGTCGTTAATCTTGATGATTTAA CATTCGTTGATATCTTAAGGACCCAGGGAGAGAACGCAGGTGGTGGGAACCTAGACGAAT ATCCATCGGATCACGATTATGTACTGTATGTTAAAAGCCTTATGCAGGCAAACATTGGAT AAGAGCCAATGCTGTCTAAGTTTAGGATCTGGCATTGACAGCTGGGCTTTTTTACCCAAG CTGTTAATAATATGCTTGCGATGGGTGCTCTCATACGACTTTCTATCCTTAGACCATATA ACGTTGCTATGGGATATTGCACTGCAAACGAGACCCTTGGCTCAGAATTCGACGTTCTTG GGTATCTGCTTTTAGCTCGACTCCTTCGCATTGGCGAAATGTTCCAATTCGTAGGTGGAA TTATTTGATATTTAGCTGCCCAGAACTGTTACATAAAAGGGAGTCGAGTTACACACGGTG GCTACTGAACTAAAATTAATGGGTTATTTGCTTAAAGTTCAGTTTTTTACTTTTTTCCTC GTTTCAGG |
| GenBank Accession | AL945571 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5617538 - go to primer design |
| BLAST e Value | 1e-43 |
| Hit Clone Code (BAC ID) | F3O9 |
| Hit Gene Code | At1g16440 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | root hair specific 3 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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