SimpleSearch - Line and FST details
Line specific information
| Line ID | 292G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N428014) |
| Segregation Analysis | 50:47:32 |
| Confirmed for Hit | At1g80120 |
| Parent of DUPLO pair | 12341 |
| Parent of pair(s) | none |
Gene hit F15N18
| Sequence (A. th genome BLAST matches underlined) | >47-K015442-022-292-G06-8409 TGTTGCAGATTAATATATTTGTGTTAGTGTTGGATTTTTCGTGGTTTTTTATTTTGGGAA AAAAAAAACGTATCTTTCGTGATTTTTCGTTGTTTTACCTATGTACATCACGACATTGCG TCGTAGTCTATATTGGGATTAGATTTACTTATATTCATCTGAATTAATCTAGTTCAGACA AGCGTATACTAATCCATATAGCCTATGGGATCCTCCCTATAGTGAGAGAGAAAAAGACAG ACTATTTACCATTTTTTTTTACAATTAAAAAATGTAGAGGTCCCCCCCGTTATTAAACCC TTTTTTTGCTCCCCCCGCCCTACATCCTTCCTCTCCGTTTCCGGATCCCACGCCCTCCAC TCCCCCCCCCCCCCTACATCTCATACACCGCCCGCCCCCTTATGACCTTTGTTCAATAAA CCCGCCTCCCCCCCCCCCCCTCATGGTTTTATTTCCGACCGTGTGTGCAGCCGCCGACCA CATCCGCCACCACACAATTCCCCCACCCCCCTCCTGTGCCCCTCAACTAAGCAACGAGCC CATTATTAATGGTGCCACGTGGCCCACGCGCGCCACACACACCATCACCACC |
| GenBank Accession | AL945917 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3722496 - go to primer design |
| BLAST e Value | 1e-62 |
| Hit Clone Code (BAC ID) | F15N18 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g80120
| Sequence (A. th genome BLAST matches underlined) | >47-K015437-022-292-G06-8409 NTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGGAGGAGAATTATGCCA CAGCTGTTGCAGGATCACTGATTGTTGTGAAGTCGTTTGAGTTTTTGGGGGTTGATAGTT TGGCGAAAAAACGACATGCATGTAAGGTGGGTGTTCGGGGTTGACTTTTAGCACAGGACC CCACTCGCCGCGACACCGACTATGGTGATCATATGGAACGCTATTCGTCGTGAGTTACTT ACCCTCACACGAGCGGTGCCTCCCTCTATATACTATGGGATCTTCCTTATAGTGAGATCG AATTTGAAAGAAAAAAACCTCTGATAGGGGTTTTCTTGGAATTGACTTTCTCTTAACTCG CTGGGAGTTGAAACTTACTCTGTTTTTAAATTTCCAAATTGGTGAAACAGAGGCCGAGAA ACCAACCAATCAAATTGCTCCAATTTTGCGTGGGATCCGTAGCAAATCCCTCGCAAAATT TTAGGGTTACACGGTGACTCGATTAGGGTTTTCAGTTTACTCTTCGAGGGAGTTGCACGG CAATGTAGTAAATCTTTCGCAAATCGCTATGGGATCCTC |
| GenBank Accession | AL945916 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:30139230 - go to primer design |
| BLAST e Value | 2e-46 |
| Hit Clone Code (BAC ID) | F18B13 |
| Hit Gene Code | At1g80120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | LURP-one-like protein (DUF567) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T27D20
| Sequence (A. th genome BLAST matches underlined) | >47-K015437-022-292-G06-8409 NTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGGAGGAGAATTATGCCA CAGCTGTTGCAGGATCACTGATTGTTGTGAAGTCGTTTGAGTTTTTGGGGGTTGATAGTT TGGCGAAAAAACGACATGCATGTAAGGTGGGTGTTCGGGGTTGACTTTTAGCACAGGACC CCACTCGCCGCGACACCGACTATGGTGATCATATGGAACGCTATTCGTCGTGAGTTACTT ACCCTCACACGAGCGGTGCCTCCCTCTATATACTATGGGATCTTCCTTATAGTGAGATCG AATTTGAAAGAAAAAAACCTCTGATAGGGGTTTTCTTGGAATTGACTTTCTCTTAACTCG CTGGGAGTTGAAACTTACTCTGTTTTTAAATTTCCAAATTGGTGAAACAGAGGCCGAGAA ACCAACCAATCAAATTGCTCCAATTTTGCGTGGGATCCGTAGCAAATCCCTCGCAAAATT TTAGGGTTACACGGTGACTCGATTAGGGTTTTCAGTTTACTCTTCGAGGGAGTTGCACGG CAATGTAGTAAATCTTTCGCAAATCGCTATGGGATCCTC |
| GenBank Accession | AL945916 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:2013426 - go to primer design |
| BLAST e Value | 4e-78 |
| Hit Clone Code (BAC ID) | T27D20 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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