SimpleSearch - Line and FST details


Line specific information

 
Line ID 293F03
Vector Used pAC161
Line Availability available as T3 set from NASC (N428095)
Segregation Analysis 50:49:36
Confirmed for Hit At2g19210
Parent of DUPLO pair none
Parent of pair(s) 6723, 6728, 6731, 7894, 10732, 10742, 72882, 72972, 73034, 73120, 73146, 73148, 73149, 73150, 73152, 73155, 73156, 73158, 73159, 73160, 73161, 73162, 73163, 73164, 73165, 73167, 73168, 73169, 73171, 73172, 73173

Gene hit At4g06485

 
Sequence (A. th genome BLAST matches underlined) 
>22-K015443-022-293-F03-8409
TGAAGCCTTTTACTGGAGGAGCTCTTCTTCACTCCTACTTGGACTTGATTCTCACTAATT
GCACTCAACTATGGGATCCTCACCTATAATGAGCTTACCCGCTGACCTGACCTTCTGATC
AATGATAGAGCTGTAAGATAGGACGTACACATCGCATTCTTATGGAACCTTCCACTTGCG
AGACGATGTAACATGAAGGGCGCTCGCGCAGGGCATTACTTCAATGGTAAAATTAACTAG
ACCATCGCGATCGTGGAACACCGCATAATGCGAGGGCCTATGATACTATCGATTNCCAGA
TAACGATCCTCCCAGAGCTGAGCCGTAATACACCAATCCCTGAGTACTAACACCTCTAGA
GATCGGCGGTATCCCACGGATTCTAATGCTACTGGGTTCCCCCAAGGGTGGGTATTCTAT
AGAACTAGGATGTTGAAAAAGGCTGGGAATTGGATGAGAACCTG
GenBank Accession FR807313 [GenBank]
Graphic View Graphic view of gene At4g06485
Predicted Position of Insertion Chr4:3095598 - go to primer design
BLAST e Value 2e-09
Hit Clone Code (BAC ID) F9E21
Hit Gene Code At4g06485 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At2g19210

 
Sequence (A. th genome BLAST matches underlined) 
>22-K015438-022-293-F03-8409
AATTTTGATCCATGTAGCTTTCCTGGACATGAAGCACTTTTACTGGAGGAGCTCTTCTTC
ACTCCTACTTGGACTTGATTCTCATAATTGCATCAACTATGGGATACTCCCTATATGTGA
TGAGTATTTGAATCAATTACGAAAAGGGTTAAGTCTTGTATTACAAATGAAAGTGTACCA
TCTGGTTGATCAGTAGGTGACTGTAGAAACTACGCTGACTCTATATGTTTCAATGGCGCT
AATGATGGGTGGAAGGGTAGATCTATGGGATCCTCCCTTATGTGAGAGACAAAGCCATTG
ACTCATCCTGACTTTGCACGCGCGACGAAAGCTATGAGATGCTCTGGGATTCTCCCTATG
GCGAGCTCGCGTTTGATGTCATCCTAAGAATCATGCGCTCTCTGGAATACGACATATAGA
GACGGGATCACGAATACCTTGAATATCTACTGGAGGAGCAGCAGTGAATGCCATAATAAA
AACAGAAGTTGCGGTCAATAAGGTGGGGATCATCAAAACACCAAACCATCCAATGTAAAG
ACGGTTTTCAG
GenBank Accession AL946041 [GenBank]
Graphic View Graphic view of gene At2g19210
Predicted Position of Insertion Chr2:8337895 - go to primer design
BLAST e Value 5e-62
Hit Clone Code (BAC ID) T20K24
Hit Gene Code At2g19210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat transmembrane protein kinase protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL946041 [GenBank]


Last Updated on 10.06.2021 13:37