SimpleSearch - Line and FST details


Line specific information

 
Line ID 294D06
Vector Used pAC161
Line Availability available as T3 set from NASC (N428170)
Segregation Analysis 50:50:37
Confirmed for Hit At3g21600
Parent of DUPLO pair 12833
Parent of pair(s) none
Note

Gene hit F21A14

 
Sequence (A. th genome BLAST matches underlined) 
>44-K015444-022-294-D06-8409
GACGGCGGAACCCTCGACATTGACGATGAATGGGCGATGAAAATCTATCGGGTTCGAGGA
ATGGACGACCAGGGGTTGAAATCGTCGACCACGTCCGAGACTTCATCAACCGGGTCCGAG
GATTCGTCTACCACGACGGTCGGATGTCTGATAAAAAAAAATGTTGCCGAATTACTTTCG
AAAATCATTGGATATGATGCAATGTTTCGCGATCGAGTCTCTTAAAATACATCAACTAAA
GAGTTTAGGATGGCAAGTTTGCATCAAATATGCCCACGGTGCCCCAACTAAACCATGAAA
ATCCGATGTTGAATCAGGACAAATGACCTATGGGATCTCTTNNNNNGNAGAAACATTTNA
AAGGGGGCCGGNAGTTGTGAGCGGCTCTGTGATGGACCCTATGATGAAGTCATACCCGGG
GGGATGGCCTTCTTTTTCGATGGTTCCAGGGGGAGGGTCCTCTTAGCTTTCACTTGATGC
CCTTATGGAATCATGATATTCACCCAGTGTAAAAATCTTTTTTTGTGGGCAAAAACTATG
GGATCCTCCCTTNNNGGGGGGNGNNCCCCANNNAGGCCGGGGCCGCGGCCCGGGCGTTTT
GATGCACAAAAGGAGGGACTGCCCCCCCCCCCATAAGGGGCCNNNACCGGACNCGCCCCC
CAGCCCACCGCGCTGATGTGCCCCGCCCCTGGGGGGGGGGCCATGCAGGTAGGNCGGGCG
CGCGGGCCGGGGCGGGGGCGTATCGATCGCCCCCGCCCCGGAAGGGGGGTGGCACACCCA
CCCGCGACCGCCCGGTGCGCGCGCCCCCCGCCGGAAAGAAGAAGGGAAAAACAACAT
GenBank Accession AL946138 [GenBank]
Graphic View Graphic view of sequence AL946138 of line 294D06
Predicted Position of Insertion Chr3:14195333 - go to primer design
BLAST e Value 9e-116
Hit Clone Code (BAC ID) F21A14
Insertion Classification Genome Hit
Confirmation Status failed

Gene hit At3g21600

 
Sequence (A. th genome BLAST matches underlined) 
>44-K015439-022-294-D06-8409
CTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAGGGA
AATTATATATCAAGAGAGCTTCGAATATATCATGAGGGTGTGATTTAAACCTGGTTAGAG
TAAGCATTACTGAGACTAAAGATTCCTCTAATGATATGTCCTGTTCCTCCAGCAATAGCC
TTAGCAACAACGTTGTTGTAATCTTCAATCCTCGGCGCAAACTCTTGCCAGTCGATTCCA
TTGTTAACCTTACTCGAAGCCGTAGACGAGAAACAAGAATTCTCACTCAAGAATTGGTCA
AGCAACTTCAGACTGTTCACGAGGGCTACGTCTCTGTCATCGCCAGAGAAAGTGACCCCG
TAGCTAAGTGGATCACCGTCTTTAACCGGGAGAGTGAAGAGGTAATCACGGGCGTCAAGT
TTTACCACTGGCTCATCTCTAATCACTGGCCACTGAAGGTCATGTCCGATTCTCACGATC
ATAGCTATGGGATCCT
GenBank Accession AL946137 [GenBank]
Graphic View Graphic view of gene At3g21600
Predicted Position of Insertion Chr3:7607716 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MIL23
Hit Gene Code At3g21600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Senescence/dehydration-associated protein-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37